Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,396,765 – 3,396,885 |
Length | 120 |
Max. P | 0.837063 |
Location | 3,396,765 – 3,396,885 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.65 |
Mean single sequence MFE | -24.88 |
Consensus MFE | -23.16 |
Energy contribution | -22.60 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.09 |
Mean z-score | -1.90 |
Structure conservation index | 0.93 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837063 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3396765 120 + 27905053 UCUCGCAGCUGGAAAUUUUGUAUAGCUAUAUAGAGGAAAGUAUUGUUUUUUAUUUUGUGUGGGCUUAUAUACGCAUUUAAUUUUAAUAGCUAUAUAAAUAUUUAUUUAGUUACAUAACAA ....(.(((((((...(((((((((((((.(((((.((((((........))))))(((((........)))))......))))))))))))))))))......))))))).)....... ( -24.40) >DroSim_CAF1 5694 119 + 1 UCUCGCAGCUGGAAAU-UUGUAUAGCUAUAUAGAGGAAAUUAUUGUUUUUUGUUUUGUGUGGGCUUAUAUACGCAUUUAAUUUUAAUAGCUAUAUAAAUAUUUAUUUAGUUACAUAACAA ....(.(((((((.((-((((((((((((....(((((((....)))))))....((((((........))))))..........)))))))))))))).....))))))).)....... ( -24.60) >DroEre_CAF1 4057 119 + 1 UCUCGCAGCUGGAAAU-UUGUAUAGCUAUAUAGAGGAAAUUAUUGUUUUUUAUUUUGUGUGGGCUUAUGUACGCAUUUAAUUUUAAUAGCUAUAUAAAUAUUUAUUUAGUUACAUAACAA ....(.(((((((.((-((((((((((((....(((((((....)))))))(((..(((((..(....)..)))))..)))....)))))))))))))).....))))))).)....... ( -26.20) >DroYak_CAF1 9393 118 + 1 -CCCGCAGCUGGAAAU-UUGUGUAGCUAUAUAGAGGAAAUUAUUGUUUUUUAUUUUGUGUGGGCUUAUAUACGCAUUUAAUUUUAAUGGCUAUAUAAAUAUUUAUUUAGUUACAUAACAA -...(.(((((((.((-((((((((((((....(((((((....)))))))....((((((........))))))..........)))))))))))))).....))))))).)....... ( -24.30) >consensus UCUCGCAGCUGGAAAU_UUGUAUAGCUAUAUAGAGGAAAUUAUUGUUUUUUAUUUUGUGUGGGCUUAUAUACGCAUUUAAUUUUAAUAGCUAUAUAAAUAUUUAUUUAGUUACAUAACAA ....(.(((((((....((((((((((((((((((((........))))))))..((((((........))))))..........)))))))))))).......))))))).)....... (-23.16 = -22.60 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:53 2006