Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,393,046 – 3,393,158 |
Length | 112 |
Max. P | 0.981569 |
Location | 3,393,046 – 3,393,158 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.47 |
Mean single sequence MFE | -46.48 |
Consensus MFE | -30.11 |
Energy contribution | -33.61 |
Covariance contribution | 3.50 |
Combinations/Pair | 1.12 |
Mean z-score | -2.39 |
Structure conservation index | 0.65 |
SVM decision value | 1.89 |
SVM RNA-class probability | 0.981569 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3393046 112 - 27905053 -ACCCGAUCCACCUCAGUAUCCACCCUGCUCAUCCGUCCCAUCGAGGGUCACACUCGAUGGCUGUCAAUGAUAGCUCCUUCCCAAGCAGGGAG-------GAGGAGAAUCGGAGGGCACC -.(((..(((..(((....(((.(((((((.........(((((((.......)))))))((((((...)))))).........))))))).)-------)).)))....)))))).... ( -42.90) >DroSim_CAF1 1994 113 - 1 -ACCCGAUCCACCUCUGCAUCCACCCUGCUCAUCCGUCCCAUCGAGGGUCACACUCGAUGGCUGUCAAUGAUAGCUCCUUCCCGUACAUGAAG------AGGGGGGAGUCGGAGGGCACC -..........((((((..(((.((((..((((.((...(((((((.......)))))))((((((...)))))).......))...))))..------)))).)))..))))))..... ( -40.70) >DroEre_CAF1 215 103 - 1 AACCCGA----------------CCCUCCUCAUCGCCUCCAUCGAGGGUCACACUCGAUGGCUGUCAAUGAUAGCUUCGUUCCGAGCAGGGGGGGGGGGGGGGGGGAGUCGGAG-GCACC ...((((----------------((((((((..(.(((((((((((.......))))))(((((((...))))))).....((.....))))))).)..))))))).)))))..-..... ( -49.40) >DroYak_CAF1 5656 116 - 1 -ACCCGAUCCACCUCUGUAUCCUCCCUUCUCAUCCGUCCCAUCGAGGGUCACACUCGAUGGCUGUCAAUGAUAGCUUCGUCCCGAGCGGUGAG--GCAGGGAGGGGAGUCGGAG-GCACC -..........((((((..(((((((((((((.(((..((((((((.......)))))))((((((...))))))........)..)))))))--).))))))))....)))))-).... ( -52.90) >consensus _ACCCGAUCCACCUCUGUAUCCACCCUGCUCAUCCGUCCCAUCGAGGGUCACACUCGAUGGCUGUCAAUGAUAGCUCCGUCCCGAGCAGGGAG______GGAGGGGAGUCGGAG_GCACC ...(((((.(.(((((.......((((((((........(((((((.......)))))))((((((...))))))........))))))))........))))).).)))))........ (-30.11 = -33.61 + 3.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:43 2006