Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,383,952 – 3,384,053 |
Length | 101 |
Max. P | 0.512008 |
Location | 3,383,952 – 3,384,053 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 82.35 |
Mean single sequence MFE | -28.27 |
Consensus MFE | -20.81 |
Energy contribution | -20.70 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -1.54 |
Structure conservation index | 0.74 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512008 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3383952 101 + 27905053 ----------------GUGCUUAAGGUGAUUUCUAAGAAUUGUGAGCAAUAAUA--UAGCAUACAUCUUGGCGUCGACACAGUCCAUUUUUAUGCCCGUUCUUAAAAGGGUAUGCUAGA ----------------.((((((..((...........))..))))))......--((((((((.(((((((((.((...........)).))))).........)))))))))))).. ( -20.40) >DroSec_CAF1 12328 118 + 1 CCGAAAAUUGUUGUUCGUGCUUAAGGUGAAUUCUAAGAAUUGUGAGCAAUAAUAUGUAGCAUACAUCUUGGCGUCGAUACAGGCAAUU-UUAUACCCUUUACUAAAAGGGUAUGCUAGA ...((((((((((((((((((.((((((.((.(((...(((((.....)))))...))).)).)))))))))).))).))).))))))-))(((((((((....)))))))))...... ( -34.30) >DroSim_CAF1 13163 119 + 1 CCGAAAAUUGUGGUUCGUGCUUAAGGUGAAUUCCAAGACUUGUGAGCAAUAAUAUGUAGCAUACAUCUUGGCGUCGAUACAGUCAGUUUUUAUACCCUUUACUAAAAGGGUAUGCUAUA ..((((((((..(((((((((.((((((...((((.....)).))((.((.....)).))...)))))))))).))).))...))))))))(((((((((....)))))))))...... ( -30.10) >consensus CCGAAAAUUGU_GUUCGUGCUUAAGGUGAAUUCUAAGAAUUGUGAGCAAUAAUAUGUAGCAUACAUCUUGGCGUCGAUACAGUCAAUUUUUAUACCCUUUACUAAAAGGGUAUGCUAGA ..................((....(.(((...((((((..((((.((...........)).))))))))))..)))...)...........(((((((((....))))))))))).... (-20.81 = -20.70 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:34 2006