Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,383,782 – 3,383,894 |
Length | 112 |
Max. P | 0.500000 |
Location | 3,383,782 – 3,383,894 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.66 |
Mean single sequence MFE | -25.32 |
Consensus MFE | -10.42 |
Energy contribution | -11.42 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.91 |
Structure conservation index | 0.41 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3383782 112 - 27905053 AAUUUUCAUUGACUCUGGUAUCCAUUAUUGCGGUUAUGGCCGCAGUUCCCAGUUGGCUCAUAAUCG-CCA-------GCAUCUCCCACUUCCCCCUUACCCAAUAUAACUCGAACCGAAA ................((((......((((((((....)))))))).....((((((........)-)))-------)).................)))).................... ( -23.40) >DroSec_CAF1 12156 102 - 1 AAUUUUCAUUGACUCUGGUAUCCAUUAUUUCGGUUAUGGCCGCAGUUCCCAGUUGGCUCAUAUUCGGCCA-------GCACCUCCCAC-----------AUAAUAUAACUCGAACCGAAA ...........................((((((((.(((.........)))(((((((.......)))))-------)).........-----------.............)))))))) ( -19.20) >DroAna_CAF1 20574 98 - 1 AAUUUUCAUUGACUCGGAUAUUCAUUAUUGCGGUUAUGGCCGCAGUUCCCAAUUGGGUCAUAAUCGGGGAAACGGAAUCAUAACGCAC-----------CGAGUAUAU-----------G ...........((((((.............(((((((((((.((((.....))))))))))))))).(....)..............)-----------)))))....-----------. ( -29.30) >DroSim_CAF1 12991 102 - 1 AAUUUUCAUUGACUCUGGUAUCCAUUAUUGCGGUUAUGGCCGCAGUUCCCAGUUGGCUCAUAUUCGGCCA-------GCACCUCCCAC-----------CCAAUAUAACUCGAACCGAAA ...............((((.((....((((((((....)))))))).....(((((((.......)))))-------)).........-----------............))))))... ( -23.90) >DroEre_CAF1 12367 101 - 1 AAUUUUCAUUGACUCUGGUAUCCAUUAUUGCGGUCAUAGCCGCAGCUCCCAGUUGGCUCAUAAUCGG-GA-------GCACCUCCCAC-----------CCAAUAAAACUGGAGCCGUAA ..........(.(((..((.........((((((....))))))((((((.((((.....)))).))-))-------)).........-----------........))..))).).... ( -30.80) >consensus AAUUUUCAUUGACUCUGGUAUCCAUUAUUGCGGUUAUGGCCGCAGUUCCCAGUUGGCUCAUAAUCGGCCA_______GCACCUCCCAC___________CCAAUAUAACUCGAACCGAAA .........(((((((((........((((((((....))))))))..))))..)).)))............................................................ (-10.42 = -11.42 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:33 2006