Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,383,415 – 3,383,506 |
Length | 91 |
Max. P | 0.900179 |
Location | 3,383,415 – 3,383,506 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 92.12 |
Mean single sequence MFE | -22.05 |
Consensus MFE | -18.11 |
Energy contribution | -19.43 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.05 |
Mean z-score | -2.01 |
Structure conservation index | 0.82 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.849952 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3383415 91 + 27905053 AAAUUGGACUCGUAAAACUGACUGAGUUUUGCGAUGCCAAUCCUUAAAGACGACUAAACUGAAAUCGCCAGAGCUAUAGCCAUGGCCAUAG ..(((((..((((((((((.....))))))))))..))))).........................((((..((....))..))))..... ( -25.00) >DroSec_CAF1 11788 91 + 1 AAAUUGGACUCGUAAAACUCACUGAGUUUGGCGAUGCCAAUCCUUAAAGACGACUAAACUGAAAUCGCCAGAGCUAUAGCCAUGGCCAUAG ..(((((..((((.((((((...)))))).))))..))))).........................((((..((....))..))))..... ( -23.00) >DroSim_CAF1 12623 91 + 1 AAAUUGGACUCGUAAAACUCACUGAGUUUGGCGAUGCCAAUCCUUAAAGACGACUAAACUGAAAUCGCCAGAGCUAUAGCCAUGGCCAUAG ..(((((..((((.((((((...)))))).))))..))))).........................((((..((....))..))))..... ( -23.00) >DroEre_CAF1 12016 85 + 1 AAAUUGGACUCGUAAAAUUCACUCAGUUUUGCGAUGCCAAUCCUUAAAGACGACUAAACUGAAAACGGCA------UAGCCAUAGCCAAAG ..(((((..((((((((((.....))))))))))..))))).........................(((.------........))).... ( -17.20) >consensus AAAUUGGACUCGUAAAACUCACUGAGUUUGGCGAUGCCAAUCCUUAAAGACGACUAAACUGAAAUCGCCAGAGCUAUAGCCAUGGCCAUAG ..(((((..((((((((((.....))))))))))..))))).........................((((..((....))..))))..... (-18.11 = -19.43 + 1.31)
Location | 3,383,415 – 3,383,506 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 92.12 |
Mean single sequence MFE | -25.55 |
Consensus MFE | -21.70 |
Energy contribution | -23.70 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.03 |
Structure conservation index | 0.85 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.900179 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3383415 91 - 27905053 CUAUGGCCAUGGCUAUAGCUCUGGCGAUUUCAGUUUAGUCGUCUUUAAGGAUUGGCAUCGCAAAACUCAGUCAGUUUUACGAGUCCAAUUU (((((((....)))))))....(((((((.......))))))).....(((((((..(((.((((((.....)))))).)))..))))))) ( -28.10) >DroSec_CAF1 11788 91 - 1 CUAUGGCCAUGGCUAUAGCUCUGGCGAUUUCAGUUUAGUCGUCUUUAAGGAUUGGCAUCGCCAAACUCAGUGAGUUUUACGAGUCCAAUUU (((((((....)))))))....(((((((.......))))))).....(((((((..(((..((((((...))))))..)))..))))))) ( -28.60) >DroSim_CAF1 12623 91 - 1 CUAUGGCCAUGGCUAUAGCUCUGGCGAUUUCAGUUUAGUCGUCUUUAAGGAUUGGCAUCGCCAAACUCAGUGAGUUUUACGAGUCCAAUUU (((((((....)))))))....(((((((.......))))))).....(((((((..(((..((((((...))))))..)))..))))))) ( -28.60) >DroEre_CAF1 12016 85 - 1 CUUUGGCUAUGGCUA------UGCCGUUUUCAGUUUAGUCGUCUUUAAGGAUUGGCAUCGCAAAACUGAGUGAAUUUUACGAGUCCAAUUU ..(((((((((((..------.))))).((((((((.((.(((..........)))...)).))))))))...........)).))))... ( -16.90) >consensus CUAUGGCCAUGGCUAUAGCUCUGGCGAUUUCAGUUUAGUCGUCUUUAAGGAUUGGCAUCGCAAAACUCAGUGAGUUUUACGAGUCCAAUUU (((((((....)))))))....(((((((.......))))))).....(((((((..(((.((((((.....)))))).)))..))))))) (-21.70 = -23.70 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:32 2006