Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,380,713 – 3,380,867 |
Length | 154 |
Max. P | 0.823017 |
Location | 3,380,713 – 3,380,827 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 96.49 |
Mean single sequence MFE | -41.30 |
Consensus MFE | -37.83 |
Energy contribution | -38.17 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.14 |
Structure conservation index | 0.92 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3380713 114 - 27905053 GGCAGGAUUCUCGGGGGAGAGGUUCUGCCCCAAAUUAGAUGAUAAAUCUCUGCGGGCGCAUCAGAAUGUAGAGAGGACCAAGAGGACCGCGUUGGGGAGACCUUAAGUCUCCAU ((((((((((((....)))).))))))))((((.............((((((((..(......)..))))))))((.((....)).))...))))((((((.....)))))).. ( -44.30) >DroSec_CAF1 9057 114 - 1 GCCAGGAUUCUCGGGGGAGAGGUCCUGCCCCAAAUUAGAUGAUAAAUCUCUGCGGGCGCAUCAGAAUGUAGAGAGAACCAGGAGGACCGCGUUGGGGAUACCUUAAGUCUCCAA ((..((.(((((((((.((.....)).))))...............((((((((..(......)..)))))))).......))))))))).((((((((.......)))))))) ( -39.10) >DroSim_CAF1 9891 114 - 1 GGCAGGAUUCUCGGGGGAGAGGUCCUGCCCCAAAUUAGAUGAUAAAUCUCUGCGGGCGCAUCAGAAUGUAGAGAGAACCAGGAGGACCGCGUUGGGGAUACCUUAAGUCUCCAA .((.((.(((((((((.((.....)).))))...............((((((((..(......)..)))))))).......))))))))).((((((((.......)))))))) ( -40.50) >consensus GGCAGGAUUCUCGGGGGAGAGGUCCUGCCCCAAAUUAGAUGAUAAAUCUCUGCGGGCGCAUCAGAAUGUAGAGAGAACCAGGAGGACCGCGUUGGGGAUACCUUAAGUCUCCAA ....((.(((((((((.((.....)).))))...............((((((((..(......)..)))))))).......)))))))....(((((((.......))))))). (-37.83 = -38.17 + 0.33)
Location | 3,380,753 – 3,380,867 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 86.70 |
Mean single sequence MFE | -35.00 |
Consensus MFE | -27.01 |
Energy contribution | -29.70 |
Covariance contribution | 2.69 |
Combinations/Pair | 1.03 |
Mean z-score | -1.87 |
Structure conservation index | 0.77 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812864 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3380753 114 - 27905053 AGCACAUUAUGUUGUUGCUAAUUAGCGAUGUCUUCAGACGGGCAGGAUUCUCGGGGGAGAGGUUCUGCCCCAAAUUAGAUGAUAAAUCUCUGCGGGCGCAUCAGAAUGUAGAGA ....((((.....((((((....))))))(((....)))(((((((((((((....)))).))))))))).......)))).....((((((((..(......)..)))))))) ( -39.10) >DroSec_CAF1 9097 101 - 1 AGCACAUUAUGUUGUUGCUAAUUAGC-------------GGCCAGGAUUCUCGGGGGAGAGGUCCUGCCCCAAAUUAGAUGAUAAAUCUCUGCGGGCGCAUCAGAAUGUAGAGA ...........((((((((((((.(.-------------((.((((((((((....)))).)))))).))).)))))).)))))).((((((((..(......)..)))))))) ( -33.10) >DroSim_CAF1 9931 114 - 1 AGCACAUUAUGUUGUUGCUAAUUAGCGAUGUCUUCAGACGGGCAGGAUUCUCGGGGGAGAGGUCCUGCCCCAAAUUAGAUGAUAAAUCUCUGCGGGCGCAUCAGAAUGUAGAGA ....((((.....((((((....))))))(((....)))(((((((((((((....)))).))))))))).......)))).....((((((((..(......)..)))))))) ( -42.00) >DroEre_CAF1 9470 105 - 1 AGCACAUUAGGUUGUUGCUAAUUAGCGAUGUCUUCAGACGGGAAGGAUUCUCGGAGGAG---CUCUGCCCCAAAUUAGAUGAUAAAUCUCUGCGGGCAUAUCAGAAUG------ (((..........((((((....)))))).(((((...(((((.....)))))))))))---)).(((((((....((((.....)))).)).)))))..........------ ( -25.80) >consensus AGCACAUUAUGUUGUUGCUAAUUAGCGAUGUCUUCAGACGGGCAGGAUUCUCGGGGGAGAGGUCCUGCCCCAAAUUAGAUGAUAAAUCUCUGCGGGCGCAUCAGAAUGUAGAGA ...........((((((((((((......(((....)))(((((((((((((....)))).)))))))))..)))))).)))))).((((((((..(......)..)))))))) (-27.01 = -29.70 + 2.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:26 2006