Locus 1119

Sequence ID 3R_DroMel_CAF1
Location 3,380,019 – 3,380,135
Length 116
Max. P 0.589957
window1833

overview

Window 3

Location 3,380,019 – 3,380,135
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 84.95
Mean single sequence MFE -37.66
Consensus MFE -23.28
Energy contribution -25.08
Covariance contribution 1.80
Combinations/Pair 1.17
Mean z-score -2.08
Structure conservation index 0.62
SVM decision value 0.11
SVM RNA-class probability 0.589957
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3380019 116 + 27905053
UUAGUCAUUAGUUGCCUGCGGUUUCGGUUGGUUUAUAUUGAUGACUCUGGUGGGGCUCCAACCAUUUGCUGUCAGGAAUAAGUCACAAGAUGCAUUUGGAAAUGUGCUCC----CACCGC
..((((((((((.(((.((.......)).)))....))))))))))..((((((((.(...(((..(((.(((..((.....))....))))))..)))....).)).))----)))).. ( -36.90)
>DroSec_CAF1 8367 115 + 1
UUAGUCAUUAGUUGCCUGCGGUUUCGGUUGGUUUAUAUUGAUGACUCUGGUGG-GCUCCAACCAUUUGCUGUGAGGAAUAAGUCACAAGAUGCAUUUGGAAAUGGGCUCC----CACCGC
..((((((((((.(((.((.......)).)))....))))))))))..(((((-(.((((.(((..((((((((........)))))....)))..)))...))))..))----)))).. ( -39.60)
>DroAna_CAF1 17379 109 + 1
UUAGUCAUUAGUUGCCUGUGGUUGUGGUAGGUUUAUAUUGAUGACUCUGGUGGGGUUGAAACCAUUUG-------AACUCAGUCACAAACUGCA----GCAAUGAACUCGAAAGCAACGC
..........((((((((..(((((((..((((((...((.((((((.....))))))....))..))-------))).)..)))).)))..))----)...((....))...))))).. ( -25.00)
>DroSim_CAF1 9200 116 + 1
UUAGUCAUUAGUUGCCUGCGGUUUCGGUUGGUUUAUAUUGAUGACUCUGGUGGGGCUCCAACCAUUUGCUGUGAGGAAUAAGUCACAAGAUGCAUUUGGAAAUGGGCUCC----CACCGC
..((((((((((.(((.((.......)).)))....))))))))))..((((((((.(((.(((..((((((((........)))))....)))..)))...))))).))----)))).. ( -43.50)
>DroEre_CAF1 8804 116 + 1
UUAGUCAUUAGUUGCCUGUGGUUUUGGUCGGUUUAUAUUGAUGACUCUGGUGGGGUCCCAGCCAUUUGCUGUGUGGAAUAAGACACAGGAUGCAUUUGGAAAUGGUGUCC----CACCUC
..((((((((((.(((.............)))....))))))))))..(((((((..(((.(((..((((.((((........)))).)..)))..)))...)))..)))----)))).. ( -43.32)
>consensus
UUAGUCAUUAGUUGCCUGCGGUUUCGGUUGGUUUAUAUUGAUGACUCUGGUGGGGCUCCAACCAUUUGCUGUGAGGAAUAAGUCACAAGAUGCAUUUGGAAAUGGGCUCC____CACCGC
..((((((((((.(((..(.(...).)..)))....))))))))))..((((((((((...(((..((((((((........)))))....)))..)))....)))))).....)))).. (-23.28 = -25.08 +   1.80) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:24 2006