Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,379,663 – 3,379,759 |
Length | 96 |
Max. P | 0.957019 |
Location | 3,379,663 – 3,379,759 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.61 |
Mean single sequence MFE | -24.54 |
Consensus MFE | -16.91 |
Energy contribution | -16.51 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.30 |
Mean z-score | -1.70 |
Structure conservation index | 0.69 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.957019 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3379663 96 + 27905053 CUAUUUUGCUGGCC-------------AGCCAGAGGAGUAACUCUCCAAAAUGUUCGGUUCAUUAUACCCUAGCACAGGGUAU----------UUUAAAGCCCCAAUAAUC-CCGAAUUU .((((((.((((..-------------..)))).((((.....))))))))))...((((....(((((((.....)))))))----------.....)))).........-........ ( -24.00) >DroSec_CAF1 8004 96 + 1 CUAUUUUGCUGGCC-------------GGCCAGAGGAAUAACUCUGCAAAAUGUUUGGUUCAUUAUACCCUAGCACAGGGUAU----------UCUCAAGACCCAAUAAUC-CCGAAUUU .((((((((.((..-------------..))((((......)))))))))))).((((.((...(((((((.....)))))))----------......)).)))).....-........ ( -25.00) >DroAna_CAF1 17033 100 + 1 CUAUUUUCCUGGCCUGUGGGCGGUUGCAGCCAAAGGGGAUUC-UUGCUACAUGUUUAGUACAUUAUAUCCUGUAAAAGGGUAU----------GCCAUA-------UAAUG-UUGCAUU- ....(..(((.(((....)))(((....)))..)))..)...-.(((.((((...((......((((((((.....)))))))----------)...))-------..)))-).)))..- ( -25.30) >DroSim_CAF1 8840 96 + 1 CUAUUUUGCUGGCC-------------GGCCAGAGGAAUAACUCUCCAAAAUGUUCGGUUCAUUAUACCCUAGCACAGGGUAU----------UCUCAAGACCCAAUAAUC-CCGAAUUU .(((((..((((..-------------..))))..)))))...........((((.((((....(((((((.....)))))))----------......)))).))))...-........ ( -23.00) >DroEre_CAF1 8503 106 + 1 CUAUUUUGCUGGCC-------------GGCCAGAAGAGUAACUCUCCAAACUGUUCGGUUCAUUAUACCCUAGCACGGGGUACUGCAGCUAUUUCCCCAG-CCCAAUAAACACCGCAUUU .((((..(((((((-------------(..(((..(((.....)))....)))..))).......((((((.....))))))..............))))-)..))))............ ( -25.40) >consensus CUAUUUUGCUGGCC_____________GGCCAGAGGAGUAACUCUCCAAAAUGUUCGGUUCAUUAUACCCUAGCACAGGGUAU__________UCUCAAG_CCCAAUAAUC_CCGAAUUU .((((((.(((((...............))))).))))))............((((((...((((((((((.....))))))........................))))..)))))).. (-16.91 = -16.51 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:23 2006