Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,363,185 – 3,363,291 |
Length | 106 |
Max. P | 0.905258 |
Location | 3,363,185 – 3,363,291 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 80.82 |
Mean single sequence MFE | -42.45 |
Consensus MFE | -32.43 |
Energy contribution | -31.88 |
Covariance contribution | -0.54 |
Combinations/Pair | 1.49 |
Mean z-score | -2.16 |
Structure conservation index | 0.76 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905258 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3363185 106 + 27905053 CGCUGGAGGUCAAUAGGCUCGGCAAGGAGCACUGCAUUGGGCGUGGAGUAGCUUUCAAUGCUGGGCUUGAAGGGCAUAUUGUGACCCUGUCUCUUCUCCAGUGGAG (((((((((....(((((((((((.((((((((.(((.....))).))).)))))...))))))))))).(((((((...))).))))......)))))))))... ( -45.60) >DroPse_CAF1 42081 106 + 1 CGCUGCAGGACAAUGGGUUCCGACAACAGCACCGCCUGGGGCGUCACAUAACUCUCCACUGAUGGCACAAAGGGCAUCAUACGACCCAGCUCUUUUUCUAGGGGCG .((((..(((........))).....))))...((((((((.((......)).))))).....))).....((((.......).))).((((((.....)))))). ( -28.00) >DroSec_CAF1 56725 106 + 1 UGCUGGAGAUCAACAGGCUCGGCAAGGAGCACUGCAUUGGGCGUGGAGUAGCUUUCAAUGCUGGGCUUGAAGGGCAUAUUGUGACCCUGUCUCUUCUCCAGUGGAG .((((((((....(((((((((((.((((((((.(((.....))).))).)))))...))))))))))).(((((((...))).))))......)))))))).... ( -46.30) >DroSim_CAF1 51604 106 + 1 CGCUGGAGAUCAACAGGCUCGGCAAGGAGCACUGCAUUCGGCGUGGAGUAGCUUUCAAUGCUGGGCUUGAAGGGCAUAUUGUGACCCUGUCUCUUCUCCAGCGGAG (((((((((....(((((((((((.((((((((.(((.....))).))).)))))...))))))))))).(((((((...))).))))......)))))))))... ( -50.50) >DroEre_CAF1 54523 106 + 1 CGUUGGAGGUCAACGGGCUCGGCAAGGAGCACUGCAUUGGGAGUGGCGUAGCUUUCGAUGCUGGGUCUGAAGGGCAUGCUGUGACCCUUGCUCUUUUCCAGUGGAG (((((.....))))).(((.((.((((((((..((((((..(((......)))..)))))).(((((...((......))..))))).)))))))).))))).... ( -42.70) >DroYak_CAF1 75189 106 + 1 CGUUGGAGGUCAACUGGCUCGGCAAGGAGCACUGCAUUGGGAGUGGCGUAGCUUUCAAUGCUGGGUUUGAAGGACAUGUUCUGACCCUGUCUCUUCUCCAGCGGAG (((((((((((....)))......(((((.((.((((((..(((......)))..)))))).(((((...((((....))))))))).)))))))))))))))... ( -41.60) >consensus CGCUGGAGGUCAACAGGCUCGGCAAGGAGCACUGCAUUGGGCGUGGAGUAGCUUUCAAUGCUGGGCUUGAAGGGCAUAUUGUGACCCUGUCUCUUCUCCAGUGGAG (((((((((....(((((((((((..(((..((((.((......)).))))..)))..))))))))))).((((((.....)).))))......)))))))))... (-32.43 = -31.88 + -0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:13 2006