Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,356,978 – 3,357,138 |
Length | 160 |
Max. P | 0.995964 |
Location | 3,356,978 – 3,357,098 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.42 |
Mean single sequence MFE | -47.21 |
Consensus MFE | -41.04 |
Energy contribution | -41.84 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.61 |
Structure conservation index | 0.87 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917365 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3356978 120 - 27905053 UGUCGGAGGGCAUCUGGCCAUCGGGCUGGAUGCCGUGCUCCAGGCAAUAGAGCUCCCAGCAGGCAUUUCCAAUCUGGACUCCGGCCUGGCCCACGUGGAUAGAGAUACAUUCGCGCAUAU ........((((((..(((....)))..))))))(((..((((((....(((...((((..((.....))...)))).)))..))))))..)))((((((........))))))...... ( -48.00) >DroSec_CAF1 50409 120 - 1 UGUCGGAGGGCAUCUGUCCAUCGGGCUGGAUGCCGUGCUCCAGGCAAUAGAGCUCCCAACAGGCAUUUCCAAUCUGGACACCGGCCUGGCCCACGUGGAUAGAGAUACAUUCGCGCAUAU (((((((.(...(((((((((.(((((((..(((.(((.....)))...).))..))).(((((...(((.....))).....)))))))))..)))))))))....).)))).)))... ( -45.60) >DroSim_CAF1 44715 120 - 1 UGUCGGAGGGCAUCUGCCCAUCGGGCUGGAUGCCGUGCUCCAGGCAAUAGAGCUCCCAACAGGCGUUUCCAAUCUGGACACCGGCCUGGCCCACGUGGAUAGAGAUACAUUCGCGCAUAU ....(..((((....))))..)((((..(..((((((.((((((.....((((.((.....)).))))....)))))))).)))))..)))).(((((((........)))))))..... ( -46.10) >DroEre_CAF1 43682 120 - 1 UGUCAGAGGGCAUCUGGCCAUCGGGCUGGAUGCCGUGCUCCAGGCAGUAGAGCUCCCAGCAGGCGUUUCCAAUCUGGACACCAGCCUGGCCCACGUGGAUAGAGAUACAUUCCCGCAUAU ........((((((..(((....)))..))))))(((..((((((......((.....)).((.(..(((.....)))).)).))))))..)))((((..............)))).... ( -46.94) >DroYak_CAF1 64947 120 - 1 UGUCAGAAGGCAUCUGGCCAUCGGGCUGGAUGCCGUGCUCCAGGCAGUAGAGCUCCCAGCAGGCGUUUCCAAUCUGGACACCAGCCUGGCCCACGUGGAUGGAGAUACAUUCCCGCAUAU ........((((((..(((....)))..))))))(((..((((((......((.....)).((.(..(((.....)))).)).))))))..)))(((((((......)))..)))).... ( -49.40) >consensus UGUCGGAGGGCAUCUGGCCAUCGGGCUGGAUGCCGUGCUCCAGGCAAUAGAGCUCCCAGCAGGCGUUUCCAAUCUGGACACCGGCCUGGCCCACGUGGAUAGAGAUACAUUCGCGCAUAU ........(((((((((((....)))))))))))(((..((((((......(((.......)))...(((.....))).....))))))..)))((((((........))))))...... (-41.04 = -41.84 + 0.80)
Location | 3,357,018 – 3,357,138 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.08 |
Mean single sequence MFE | -48.34 |
Consensus MFE | -44.00 |
Energy contribution | -43.84 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.08 |
Mean z-score | -1.99 |
Structure conservation index | 0.91 |
SVM decision value | 2.64 |
SVM RNA-class probability | 0.995964 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3357018 120 + 27905053 AGUCCAGAUUGGAAAUGCCUGCUGGGAGCUCUAUUGCCUGGAGCACGGCAUCCAGCCCGAUGGCCAGAUGCCCUCCGACAAGACCGUAGGCGGAGGUGAUGACUCGUUUAACACCUUCUU ..(((.....)))...((((((.((..((((((.....))))))..((((((..(((....)))..))))))...........))))))))(((((((.(((.....))).))))))).. ( -47.10) >DroSec_CAF1 50449 120 + 1 UGUCCAGAUUGGAAAUGCCUGUUGGGAGCUCUAUUGCCUGGAGCACGGCAUCCAGCCCGAUGGACAGAUGCCCUCCGACAAGACCGUGGGCGGAGGUGAUGACUCGUUCAACACCUUCUU .(((((...(((.....(.(((((((.((((((.....))))))..((((((...((....))...)))))).))))))).).))))))))(((((((.(((.....))).))))))).. ( -45.80) >DroSim_CAF1 44755 120 + 1 UGUCCAGAUUGGAAACGCCUGUUGGGAGCUCUAUUGCCUGGAGCACGGCAUCCAGCCCGAUGGGCAGAUGCCCUCCGACAAGACCGUGGGCGGAGGUGAUGACUCGUUCAACACCUUCUU .(((((....(....)...(((((((.((((((.....))))))..((((((..((((...)))).)))))).)))))))......)))))(((((((.(((.....))).))))))).. ( -51.70) >DroEre_CAF1 43722 120 + 1 UGUCCAGAUUGGAAACGCCUGCUGGGAGCUCUACUGCCUGGAGCACGGCAUCCAGCCCGAUGGCCAGAUGCCCUCUGACAAGACCGUGGGCGGAGGUGAUGACUCGUUCAACACCUUCUU ..(((.....)))...(((..(.((..((((((.....))))))..((((((..(((....)))..))))))...........)))..)))(((((((.(((.....))).))))))).. ( -48.30) >DroYak_CAF1 64987 120 + 1 UGUCCAGAUUGGAAACGCCUGCUGGGAGCUCUACUGCCUGGAGCACGGCAUCCAGCCCGAUGGCCAGAUGCCUUCUGACAAGACCGUGGGCGGAGGUGAUGACUCGUUCAACACCUUCUU ..(((.....)))...(((..(.((..((((((.....))))))..((((((..(((....)))..)))))).(((....))))))..)))(((((((.(((.....))).))))))).. ( -48.80) >consensus UGUCCAGAUUGGAAACGCCUGCUGGGAGCUCUAUUGCCUGGAGCACGGCAUCCAGCCCGAUGGCCAGAUGCCCUCCGACAAGACCGUGGGCGGAGGUGAUGACUCGUUCAACACCUUCUU ..(((.....)))...((((((.((..((((((.....))))))..((((((..(((....)))..))))))...........))))))))(((((((.(((.....))).))))))).. (-44.00 = -43.84 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:08 2006