Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 660,492 – 660,585 |
Length | 93 |
Max. P | 0.682124 |
Location | 660,492 – 660,585 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 81.44 |
Mean single sequence MFE | -17.58 |
Consensus MFE | -12.50 |
Energy contribution | -11.70 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.32 |
Mean z-score | -1.57 |
Structure conservation index | 0.71 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.682124 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 660492 93 + 27905053 UGAUCCAGCAUGACUUUGCUUUCAAAACAUAUUUGCAACGGCGAAAAGCCGAC--AACAAUAGAGUAACACUCCCGUCAUAAAGGAAAAGUAUAA ...(((...(((((.((((...............))))((((.....))))..--.......(((.....)))..)))))...)))......... ( -18.66) >DroPse_CAF1 83234 83 + 1 UGAUCCGGUAUGACUUUGCUUUCAAAACAUAUUUGUAACGGCAAAAAGCCGACACAACAAAAGCGUAAGACCC------------AAAGAUGGCA ......(((...((...(((((....(((....)))..((((.....))))........)))))))...))).------------.......... ( -13.90) >DroSim_CAF1 77312 93 + 1 UGAUCCAGCAUGACUUUGCUUUCAAAACAUAUUUGCAACGGCGAAAAGCCGAC--AACAAUAGAGUAACACUCACGGCAUAAAGCAGAAAUAUAA (((...((((......)))).))).......(((((..((((.....))))..--.......(((.....)))..........)))))....... ( -20.00) >DroEre_CAF1 76969 92 + 1 UGAUCCAGCAUGACUUUGCUUUCAAAACAUAUUUGCAACGGCGAAAAGCCGAC--AACAAUAGAGUAACACUCCCGGCACAGGGG-AAAAUAUAA (((...((((......)))).)))....((((((....((((.....))))..--................((((......))))-.)))))).. ( -19.00) >DroAna_CAF1 82418 93 + 1 UGAUCCAGCAUGACUUUGCUUUCAAAACAUAUUUGUAACGGCGAAAAGCCGAC--AACAAAAGGGUAACACUCUCGGAAAAAAUAAAAAAUGGAA ...(((((((......)))((((........(((((..((((.....))))..--.)))))((((.....))))..))))..........)))). ( -20.00) >DroPer_CAF1 84232 83 + 1 UGAUCCGGUAUGACUUUGCUUUCAAAACAUAUUUGUAACGGCAAAAAGCCGACACAACAAAAGCGUAAGACCC------------AAAGAUGGCA ......(((...((...(((((....(((....)))..((((.....))))........)))))))...))).------------.......... ( -13.90) >consensus UGAUCCAGCAUGACUUUGCUUUCAAAACAUAUUUGCAACGGCGAAAAGCCGAC__AACAAAAGAGUAACACUC_CGGCA_AAAG_AAAAAUAGAA (((...((((......)))).))).....(((((....((((.....))))...........(((.....)))..............)))))... (-12.50 = -11.70 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:29 2006