Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,356,010 – 3,356,129 |
Length | 119 |
Max. P | 0.537251 |
Location | 3,356,010 – 3,356,129 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.22 |
Mean single sequence MFE | -34.94 |
Consensus MFE | -22.84 |
Energy contribution | -23.24 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.17 |
Mean z-score | -2.24 |
Structure conservation index | 0.65 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537251 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3356010 119 - 27905053 UGGUAUAUUUUUAAG-GCAGUAAUUUCCGAGAGCAGUACAGUACUGCGCAGUUAUCGAUCCAUUUUGCGCACUUAUCGAUUAAUUGCGCGCGAAAUGAGUAUGCUUUGAAAUAAUCCACA (((.....(((((((-(((...(((((((...((((((...))))))((((((((((((...............))))).))))))).)).))))).....))))))))))....))).. ( -34.96) >DroSec_CAF1 49439 119 - 1 UAGUAUAUUUUUAAG-GCAGUAUUUUCCGAGUAAAGUACAGUACUGCGCAGUUAUCGAUCCACUUUGCGCACUUAUCGAUUAAUUGCGCGCGAAGCGAGUAUGCUUUGAAAUAUUGUACA ..(((((.(((((((-((.(((((((......))))))).(((((((((((((((((((...............))))).)))))))))((...)).))))))))))))))...))))). ( -36.16) >DroSim_CAF1 43741 119 - 1 UAGUAUAUUUUUAAG-GCAGUAUUUUCCGAGUAAAGUACAGUACUGCGCAGUUAUCGAUCCACUUUGCGCACUUAUCGAUUAAUUGCGCGCGAAACGAGUAUGCUUUGAAAUAUUGCACA ..(((...(((((((-((.(((((((......))))))).(((((((((((((((((((...............))))).))))))))).((...))))))))))))))))...)))... ( -32.76) >DroEre_CAF1 42747 120 - 1 UAGUAUAUUUUUGUGUGCAGUAUGUUGUGAGUGCAGUACAGUGCUGCGCAGUUAUCGAUCCACUUUGCGCACUUAUCGAUAGGUUGCGCGCGAAACUAGCAUGCUUUGAAAAAACGGACA .(((((..((((((((((((..((((((((((((.(((.((((...((.......))...)))).)))))))))).)))))..)))))))))))).....)))))............... ( -37.40) >DroYak_CAF1 63867 120 - 1 UAGUAUAUUUUUGGGUGCAGUAUAUUGUGAGUGCAGUACAGUACUGCGCAGUUAUCGAUCCACUUUGCGCACUUAUCGAUUGGUUGCGCGCGAAACUAGCAUGCUUUGAAAUAGUGCAUG ..(((((((((.(.(((((((.....(((.((((((((...)))))))).(....)....)))(((((((.(..(((....))).).)))))))))).)))).)...))))).))))... ( -33.40) >consensus UAGUAUAUUUUUAAG_GCAGUAUUUUCCGAGUGCAGUACAGUACUGCGCAGUUAUCGAUCCACUUUGCGCACUUAUCGAUUAAUUGCGCGCGAAACGAGUAUGCUUUGAAAUAAUGCACA .(((((((((......((...........(((((......)))))((((((((((((((...............)))))).)))))))))).....)))))))))............... (-22.84 = -23.24 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:06 2006