Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,354,133 – 3,354,244 |
Length | 111 |
Max. P | 0.724263 |
Location | 3,354,133 – 3,354,244 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 77.96 |
Mean single sequence MFE | -40.30 |
Consensus MFE | -27.97 |
Energy contribution | -26.92 |
Covariance contribution | -1.05 |
Combinations/Pair | 1.37 |
Mean z-score | -1.28 |
Structure conservation index | 0.69 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724263 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3354133 111 + 27905053 AAUCGGUCUCUCCUGCCGAGCAUCGAGCUCUGAA---UUCCAUGGGUCUGCCAAUUGGGAGGCCACAAAUCGGGCUUUCCCUAGCGGCGGCUUGGCAAAGGGAAUUCCCUCGAA ..(((........((((((((...((.((.((..---...)).)).))((((....((((((((........))).)))))....)))))))))))).((((....))))))). ( -42.40) >DroPse_CAF1 36447 114 + 1 UAUGUCCCUUUCCUGUUGGGCAUCUAGCUCCUGACCCUCCCAUGGAUCUGCGGGCUCUGGGGCCACAAAACGGAGAUCAGCCAGCGGUGGUUUGCCAAAGGGAAUGCCCUCAAA ....(((((((....((((((.(((((..((((....(((...)))....))))..)))))))).)))...((((((((.(....).)))))).)))))))))........... ( -34.30) >DroSec_CAF1 47559 111 + 1 AAUCGGCCUCUCCUGCCGAGCAUCCAACUCUGAA---UUCCAUGGGUCUGCCAAUUGGGAGGCCCUAAAUCGGGCUUUCCCCAGCGGCGGCUUGGCAAAGGGAAUUCCCUCGAA ..(((........((((((((.....((((((..---...)).)))).((((....(((((((((......))))))))).....)))))))))))).((((....))))))). ( -44.20) >DroSim_CAF1 41832 111 + 1 AAUCGAUCUCUCCUGCCGAGCAUCGAGUUCUGAA---UUCCAUGGGUCUGCCAAUUGGGAGGCCCCAAAUCGGGCUUUCCCCAGCGGCGGCUUGGCAAAGGGAAUUCCCUCAAA ......(((((..((((((((...((.(..((..---...))..).))((((....(((((((((......))))))))).....)))))))))))).)))))........... ( -41.10) >DroEre_CAF1 40868 111 + 1 AAUAGGUCCCUCCUGCCGAGCAUCGAGCUCUGAA---UUCCACGGAUCUGCCGAAUGGGAGGCCCUAAACCGGGUUUUCCCCAGCGGCGGCUGGGCAUAGGGAAUCCCCUCGAA ...((((((((..((((((((.....))))....---.....(((..((((((...(((((((((......)))))))))....))))))))))))).)))))....))).... ( -45.50) >DroPer_CAF1 36228 114 + 1 UAUGUCCCUUUCCUGUUGGGCAUCUAGCUCCUGACCCUCCCAUGGAUCUGCGGGCUCUGGGGCCACAAAACGGAGAUCAGCCAGCGGUGGUUUGCCAAAGGGAAUGCCCUCAAA ....(((((((....((((((.(((((..((((....(((...)))....))))..)))))))).)))...((((((((.(....).)))))).)))))))))........... ( -34.30) >consensus AAUCGGCCUCUCCUGCCGAGCAUCGAGCUCUGAA___UUCCAUGGAUCUGCCAAUUGGGAGGCCACAAAUCGGGCUUUCCCCAGCGGCGGCUUGGCAAAGGGAAUUCCCUCAAA .............((((((((.......(((............))).((((.....((((((((........))))))))...))))..)))))))).((((....)))).... (-27.97 = -26.92 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:05 2006