Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,353,942 – 3,354,053 |
Length | 111 |
Max. P | 0.796933 |
Location | 3,353,942 – 3,354,053 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.63 |
Mean single sequence MFE | -23.88 |
Consensus MFE | -15.12 |
Energy contribution | -15.80 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.08 |
Mean z-score | -1.51 |
Structure conservation index | 0.63 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796933 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3353942 111 - 27905053 AAGUAUUUC----UUCACAACCCAAAAAUUUGGCUAAGCAUUUAUUAACGGGGCAGGCCAUCGUAUACAAACU-UGGCCUGCUCAAUUUAAAAUUCUGUAAGAGAAUUAUUG----AGAU .((((.(((----((.(((..((((....))))...........((((..((((((((((..((......)).-))))))))))...)))).....)))..))))).)))).----.... ( -27.20) >DroSec_CAF1 47393 86 - 1 AAGUU-----------------------------UAUUUAUUUAUUAACGGGGAAGGCCAUCGUAUCCAAACU-UGGCCUGCUCAAUUUAAGAUUCUGUAAGAGAAUUAUUG----AGGU .....-----------------------------....................((((((..((......)).-)))))).((((((....((((((.....))))))))))----)).. ( -17.90) >DroSim_CAF1 41641 111 - 1 AAGUAAUUC----UUCGCAACACCCAAAUUUAACUAAGCAUUUAUUAACGGGGUAGGCCAUCGUAUCCAAACU-UGGCCUGCUCAAUUUAAGAUUCUGUAAGAGAAUUAUUG----AGGU .((((((((----((.(((...(((.....(((........))).....)))((((((((..((......)).-))))))))..............)))..)))))))))).----.... ( -25.50) >DroEre_CAF1 40672 116 - 1 GAGUAGUUC----UUCGCAACGCCCAAAUUUGGCCAAACAUUUAUUAACUCGGCAGGCCAUCGUAUCCAAACUUUGGCCUGCUCAAUUUAUGAUUCAGUAAUAAAACUGUUAAGUAAGGG ((((.(((.----.....)))(((.......))).............))))(((((((((..((......))..)))))))))...(((((....((((......))))....))))).. ( -29.80) >DroYak_CAF1 61966 108 - 1 AAGUAUUUUAUUAUUAGCA----CCA---UAGGCUAACCAUUUAUUAAG-AGGCAUGCCAUCGUAUCCUAACUUUGGCCUGCUCAAUUUAAGGUUCCAUAACAAACUUGUGA----AAGG .............(((((.----...---...)))))((.(((((...(-((.((.((((..((......))..)))).)))))......(((((........)))))))))----).)) ( -19.00) >consensus AAGUAUUUC____UUCGCAAC_CCCAAAUUUGGCUAAGCAUUUAUUAACGGGGCAGGCCAUCGUAUCCAAACU_UGGCCUGCUCAAUUUAAGAUUCUGUAAGAGAAUUAUUG____AGGU ..................................................((((((((((..((......))..)))))))))).................................... (-15.12 = -15.80 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:04 2006