Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,348,528 – 3,348,625 |
Length | 97 |
Max. P | 0.513929 |
Location | 3,348,528 – 3,348,625 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 87.63 |
Mean single sequence MFE | -19.78 |
Consensus MFE | -14.72 |
Energy contribution | -15.12 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.52 |
Structure conservation index | 0.74 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513929 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3348528 97 - 27905053 UAUAAAAUCUCUAAUGACGACUGCACCCUUACACUUGAAAGACGAGUAGCUCGUCAAUAUAGAUAAUGUUAAUUAAACAUUGACUCUA--CUCGUUGUG .............(..((((....................((((((...))))))....(((((((((((.....)))))))..))))--.))))..). ( -18.60) >DroSec_CAF1 41936 99 - 1 UAUAAAAUCUCUAGUGACGACUGCACCCUUAUACUUGAAAGGCGAGUAGGUCGUCAAUAUAGAUAAUGUUAAUUAAACAUUGAAUCUACACUCGUUGCG .........((((.((((((((((.(((((........)))).).))).)))))))...))))(((((((.....)))))))................. ( -23.60) >DroSim_CAF1 36123 99 - 1 UAUAAAAUCUGUAAUGACGACUGCACCCUUAUACUUGAAAGACGAGUAGCUCGUCAAUAUAGAUAAUGUUAAUUAAACAUUGAAUCUACACUCGUUGCG ......(((((((.((((((((((.(.(((........)))..).)))).)))))).)))))))((((((.....)))))).................. ( -21.40) >DroEre_CAF1 34721 95 - 1 UAUAAAUUCUCUAAUGACGACUGCAUCAUUAUAUUCGAUAGACGAGUAGCUCGUCAAUAUAGAUAAUGUUAAUUAAACAUUGAC----UACUCGCUGUG ...........((((((.(....).))))))......((((.(((((((.(((((......)))((((((.....)))))))))----)))))))))). ( -20.60) >DroYak_CAF1 55465 95 - 1 UAUAUAAUCUCUAGUGACGACCGCACCCUUAUAUUAAAAAGACGAGUAGCUCGUCAGUAUAGAUAAUUUUAAUUAAACAUUGAC----CACUCGUUGUG ......((((.((.(((((((..(.(.(((........)))..).)..).)))))).)).))))............(((.(((.----...))).))). ( -14.70) >consensus UAUAAAAUCUCUAAUGACGACUGCACCCUUAUACUUGAAAGACGAGUAGCUCGUCAAUAUAGAUAAUGUUAAUUAAACAUUGACUCUACACUCGUUGUG .......(((.((.((((((((((.....................)))).)))))).)).)))(((((((.....)))))))................. (-14.72 = -15.12 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:01 2006