Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,343,884 – 3,344,072 |
Length | 188 |
Max. P | 0.993355 |
Location | 3,343,884 – 3,343,996 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.15 |
Mean single sequence MFE | -28.03 |
Consensus MFE | -20.17 |
Energy contribution | -20.73 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -1.20 |
Structure conservation index | 0.72 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623492 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3343884 112 + 27905053 AUCG-------GCAGCAGACUUUUAUUAUCGUGUAUAUAUGAAAGUAUGUUAUUAUCCUUCGCAGACGCUACUGGUACGCUUCGUCACUACGUGGACUACCUG-ACGUCCAAAGUGAUGA ...(-------((((((.((((((((............)))))))).))))...........(((......)))....)))((((((((...(((((......-..))))).)))))))) ( -28.30) >DroSec_CAF1 37327 97 + 1 AUGGUUAAAUAACAGCAGACUUUUAUUAUCGUGUGUAUAUGGAAGUAUGUUAUUAGCCUU----------------------CGUCACUACGUGGAAUGCCUG-CCGUCCACAGUGAUGA ..((((((.(((((....(((((((((((.....))).)))))))).))))))))))).(----------------------(((((((..(((((..(....-)..))))))))))))) ( -29.80) >DroSim_CAF1 31511 112 + 1 UUUG--------GAGCAGACUUUUAUUAUCGUGUAUAUAUGAAAGUAUGUUAUUAGCCUUCGCAGACGCUACUGGUGCGCUUCGUCACUACGUGGACUGACUGACUGUCCACACUGAUGA ...(--------((((.(((...((((.(((((....))))).)))).)))....(((...((....))....)))..)))))((((....((((((.........))))))..)))).. ( -26.00) >consensus AUCG________CAGCAGACUUUUAUUAUCGUGUAUAUAUGAAAGUAUGUUAUUAGCCUUCGCAGACGCUACUGGU_CGCUUCGUCACUACGUGGACUGCCUG_CCGUCCACAGUGAUGA .............((((.(((((((((((.....))).)))))))).))))...............................(((((((..((((((.........))))))))))))). (-20.17 = -20.73 + 0.56)
Location | 3,343,917 – 3,344,033 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.00 |
Mean single sequence MFE | -30.83 |
Consensus MFE | -18.27 |
Energy contribution | -19.17 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.07 |
Mean z-score | -1.76 |
Structure conservation index | 0.59 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.762428 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3343917 116 + 27905053 GAAAGUAUGUUAUUAUCCUUCGCAGACGCUACUGGUACGCUUCGUCACUACGUGGACUACCUG-ACGUCCAAAGUGAUGAAUGUGGUCAAUAUUUGAUAGCUUAUGCGUAUAUGUGU--- ....................((((.((((....(((.((((((((((((...(((((......-..))))).))))))))).)))((((.....)))).)))...))))...)))).--- ( -34.20) >DroSec_CAF1 37367 90 + 1 GGAAGUAUGUUAUUAGCCUU----------------------CGUCACUACGUGGAAUGCCUG-CCGUCCACAGUGAUGAAUGUGGUCAAUAUUUAUUGGCUUAUGCUAAUAU------- ..........(((((((.((----------------------(((((((..(((((..(....-)..))))))))))))))...(((((((....)))))))...))))))).------- ( -28.30) >DroSim_CAF1 31543 120 + 1 GAAAGUAUGUUAUUAGCCUUCGCAGACGCUACUGGUGCGCUUCGUCACUACGUGGACUGACUGACUGUCCACACUGAUGAAUGUGGUCAAUAUUUAAUAGCUUAUGCUAAUAUGUGUAUG ....(((..((((((((.(..((...(((.....)))((((((((((....((((((.........))))))..))))))).)))..............))..).))))))).)..))). ( -30.00) >consensus GAAAGUAUGUUAUUAGCCUUCGCAGACGCUACUGGU_CGCUUCGUCACUACGUGGACUGCCUG_CCGUCCACAGUGAUGAAUGUGGUCAAUAUUUAAUAGCUUAUGCUAAUAUGUGU___ ....(((((((((((...........................(((((((..((((((.........)))))))))))))(((((.....))))))))))))..))))............. (-18.27 = -19.17 + 0.89)
Location | 3,343,957 – 3,344,072 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.46 |
Mean single sequence MFE | -29.73 |
Consensus MFE | -20.99 |
Energy contribution | -22.44 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.10 |
Mean z-score | -2.33 |
Structure conservation index | 0.71 |
SVM decision value | 2.39 |
SVM RNA-class probability | 0.993355 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3343957 115 + 27905053 UUCGUCACUACGUGGACUACCUG-ACGUCCAAAGUGAUGAAUGUGGUCAAUAUUUGAUAGCUUAUGCGUAUAUGUGU----AACUGUAUUAGGUAAAUAUGAUUGCUAUAAUUACCAAUA (((((((((...(((((......-..))))).))))))))).(..((((.(((((((((..(((((((....)))))----))...)))))))))....))))..).............. ( -30.80) >DroSec_CAF1 37387 99 + 1 --CGUCACUACGUGGAAUGCCUG-CCGUCCACAGUGAUGAAUGUGGUCAAUAUUUAUUGGCUUAUGCUAAUAU------------------GGUGAAUAUGAUUGCUACACUUACCUUUA --(((((((..(((((..(....-)..))))))))))))...(..((((.(((((((((((....))))....------------------.)))))))))))..).............. ( -27.60) >DroSim_CAF1 31583 120 + 1 UUCGUCACUACGUGGACUGACUGACUGUCCACACUGAUGAAUGUGGUCAAUAUUUAAUAGCUUAUGCUAAUAUGUGUAUGUAAAAGCAUUAGGUGAAUAUGAUUGCUAUAGUUACCUAUA (((((((....((((((.........))))))..))))))).(..((((.((((((....((.(((((..(((......)))..))))).)).))))))))))..)(((((....))))) ( -30.80) >consensus UUCGUCACUACGUGGACUGCCUG_CCGUCCACAGUGAUGAAUGUGGUCAAUAUUUAAUAGCUUAUGCUAAUAUGUGU____AA__G_AUUAGGUGAAUAUGAUUGCUAUAAUUACCUAUA .((((((((..((((((.........))))))))))))))..(..((((.((((((.((((....))))........................))))))))))..).............. (-20.99 = -22.44 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:00 2006