Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,341,327 – 3,341,423 |
Length | 96 |
Max. P | 0.921731 |
Location | 3,341,327 – 3,341,423 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 76.22 |
Mean single sequence MFE | -34.48 |
Consensus MFE | -16.62 |
Energy contribution | -15.57 |
Covariance contribution | -1.05 |
Combinations/Pair | 1.43 |
Mean z-score | -2.29 |
Structure conservation index | 0.48 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921731 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3341327 96 + 27905053 C-U---GAUUUCCAGCCCGAG----AAUCUAAGGCUGGCGUUGCGCUUUACUCAGGGUCCGCUCGGCAACUGA-GCA-UUUAAAGUAAGCGCCGGCUAAGUUUAGU .-.---((((..(.....)..----))))...((((((((((..(((((((((((...((....))...))))-)..-..)))))).))))))))))......... ( -33.20) >DroVir_CAF1 40208 97 + 1 U-U---AAACGCCGGCUUUGG----GGCCUCAGGCUUGAGUUGCGUUUUACUCAGGGGUUGCGCGUCAACUGAAGCA-UUUGAAGUAGGCGCCGGCUAGGUUUAGU (-(---((((((((((.((..----.((.(((.((((.((((((((...(((....)))...))).))))).)))).-..))).)).)).))))))...)))))). ( -36.00) >DroPse_CAF1 26617 101 + 1 U-U---AUAUUCCAGCUCUGGGAGUAGCCUAAGGCUUUCGUUGCGUUUUGUUCAGGGGCUGGUCGGCAACUGA-ACAAUUUCAAGUAAGCGCCGGCUAAGUUUAGU .-.---...(((((....))))).(((((...(((.((..((.....((((((((..(((....)))..))))-)))).....))..)).))))))))........ ( -32.00) >DroGri_CAF1 42294 98 + 1 UUU---UGAAGCUGGCUUUGA----UGCCUUAGGCUUGAGUUGCGUUUUACUCAGGGGUUGCGCGUCUACUGAAACA-UUUGAAGUAGGCGCCGGCUAAGUUUAGU ...---..((((((((.....----.))).....(((((((........)))))))(((((.(((((((((......-.....)))))))))))))).)))))... ( -33.80) >DroAna_CAF1 25129 97 + 1 A-UAAGAAUUUCCAGCCUG------AAUUUAAGGCUGGCGUUGCGCUUUACUCAGGGUCCGCUCGGAAACUGA-GCA-UUUAAAGUAAGCGCCGGCUAAGUUUAGU .-..............(((------(((((..((((((((((..(((((((((((..(((....)))..))))-)..-..)))))).)))))))))))))))))). ( -39.90) >DroPer_CAF1 26629 101 + 1 G-U---AUAUUCCAGCUCUGGGAGUAGCCUAAGGCUUUCGUUGCGUUUUGUUCAGGGGCUGGUCGGCAACUGA-ACAAUUUCAAGUAAGCGCCGGCUAAGUUUAGU .-.---...(((((....))))).(((((...(((.((..((.....((((((((..(((....)))..))))-)))).....))..)).))))))))........ ( -32.00) >consensus U_U___AAAUUCCAGCUCUGG____AGCCUAAGGCUUGCGUUGCGUUUUACUCAGGGGCUGCUCGGCAACUGA_ACA_UUUAAAGUAAGCGCCGGCUAAGUUUAGU .............((((........((((...))))......((((((...((((..(((....)))..)))).((........)))))))).))))......... (-16.62 = -15.57 + -1.05)
Location | 3,341,327 – 3,341,423 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 76.22 |
Mean single sequence MFE | -27.45 |
Consensus MFE | -12.52 |
Energy contribution | -12.05 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.31 |
Mean z-score | -2.22 |
Structure conservation index | 0.46 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.856423 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3341327 96 - 27905053 ACUAAACUUAGCCGGCGCUUACUUUAAA-UGC-UCAGUUGCCGAGCGGACCCUGAGUAAAGCGCAACGCCAGCCUUAGAUU----CUCGGGCUGGAAAUC---A-G ..............((((((........-(((-((((...((....))...)))))))))))))....(((((((.((...----)).))))))).....---.-. ( -31.50) >DroVir_CAF1 40208 97 - 1 ACUAAACCUAGCCGGCGCCUACUUCAAA-UGCUUCAGUUGACGCGCAACCCCUGAGUAAAACGCAACUCAAGCCUGAGGCC----CCAAAGCCGGCGUUU---A-A ..(((((...((((((.....(((((..-.((((.(((((.((....((......))....))))))).)))).)))))..----.....))))))))))---)-. ( -28.30) >DroPse_CAF1 26617 101 - 1 ACUAAACUUAGCCGGCGCUUACUUGAAAUUGU-UCAGUUGCCGACCAGCCCCUGAACAAAACGCAACGAAAGCCUUAGGCUACUCCCAGAGCUGGAAUAU---A-A ........(((((...((((.((((...((((-((((..((......))..))))))))....))).).))))....)))))...(((....))).....---.-. ( -25.40) >DroGri_CAF1 42294 98 - 1 ACUAAACUUAGCCGGCGCCUACUUCAAA-UGUUUCAGUAGACGCGCAACCCCUGAGUAAAACGCAACUCAAGCCUAAGGCA----UCAAAGCCAGCUUCA---AAA .....((((((...(((((((((.....-......)))))..)))).....))))))............((((....(((.----.....))).))))..---... ( -20.40) >DroAna_CAF1 25129 97 - 1 ACUAAACUUAGCCGGCGCUUACUUUAAA-UGC-UCAGUUUCCGAGCGGACCCUGAGUAAAGCGCAACGCCAGCCUUAAAUU------CAGGCUGGAAAUUCUUA-U ..............((((((........-(((-((((..(((....)))..)))))))))))))....(((((((......------.))))))).........-. ( -33.70) >DroPer_CAF1 26629 101 - 1 ACUAAACUUAGCCGGCGCUUACUUGAAAUUGU-UCAGUUGCCGACCAGCCCCUGAACAAAACGCAACGAAAGCCUUAGGCUACUCCCAGAGCUGGAAUAU---A-C ........(((((...((((.((((...((((-((((..((......))..))))))))....))).).))))....)))))...(((....))).....---.-. ( -25.40) >consensus ACUAAACUUAGCCGGCGCUUACUUCAAA_UGC_UCAGUUGCCGAGCAGCCCCUGAGUAAAACGCAACGCAAGCCUUAGGCU____CCAAAGCUGGAAUUU___A_A ...........(((((.............(((.((((..((......))..)))))))....((.......)).................)))))........... (-12.52 = -12.05 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:57 2006