Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,340,848 – 3,340,956 |
Length | 108 |
Max. P | 0.701912 |
Location | 3,340,848 – 3,340,956 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.72 |
Mean single sequence MFE | -28.63 |
Consensus MFE | -25.00 |
Energy contribution | -24.53 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.21 |
Mean z-score | -0.73 |
Structure conservation index | 0.87 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3340848 108 - 27905053 -GGCCAG-CGGCGUGAGACCACAG--CAAGAUGUCAUUCGAUAUAGCCGUGGCCGAUCAGAUGCGCAUUGCACUGAAGUAAGUCC---CCC--CUCCCCCAC-AGUCC--UUCAAGUGGC -(((((.-(((((((....)))..--....(((((....))))).)))))))))..((((.(((.....))))))).........---...--.....((((-.....--.....)))). ( -33.10) >DroSec_CAF1 34884 96 - 1 -GGCCAG-CGGCGUGAGACCACAG--CAAGAUGUCAUUCGAUAUAGCCGUGGCCGAUCAGAUGCGCAUUGCACUGAAGUAAGUAC---CCU--C-------CAAAUCC--UUCA------ -(((((.-(((((((....)))..--....(((((....))))).)))))))))..((((.(((.....))))))).........---...--.-------.......--....------ ( -29.80) >DroSim_CAF1 28860 101 - 1 -GGCCAG-CGGCGUGAGACCACAG--CAAGAUGUCAUUCGAUAUAGCCGUGGCCGAUCAGAUGCGCAUUGCACUGAAGUAAGUCC---CCC--C-------C-AAUCC--UUCAAUUGUC -(((((.-(((((((....)))..--....(((((....))))).)))))))))..((((.(((.....))))))).........---...--.-------.-.....--.......... ( -29.80) >DroEre_CAF1 27751 112 - 1 -GGCCAG-CGGCGUGAGACCACAG--CAAGAUGUCAUUCGAUAUAGCCGUGGCCGAUCAGAUGCGCAUUGCACUGAAGUAAGUCC---CAUAAUUCAGCUAC-AGCCAUAUUCAAUUGCC -(((((.-(((((((....)))..--....(((((....))))).)))))))))((((((.(((.....))))))).........---.........((...-.)).....))....... ( -30.40) >DroYak_CAF1 28920 89 - 1 -GGCCAG-CGGCGUGAGACCACAG--CAAGAUGUCAUUCGAUAUAGCCGUGGCUGAUCAGAUGCGCAUUGCACUGAAGUAAGUCC---CAAAGUAA------------------------ -(((((.-(((((((....)))..--....(((((....))))).)))))))))..((((.(((.....))))))).........---........------------------------ ( -27.10) >DroMoj_CAF1 41935 98 - 1 UGGCGAGCUGCUGCAAAGCCACAAGAGAACAUGUCAUUCGAUAUUGCCAUCGCCGAUCAGAUGCGCAUUGCAUUGAAGUAAGUGAAUACA-------------AAU---AUUUA------ ((((..((....))...))))........(((....((((((..(((((((........)))).)))....))))))....)))......-------------...---.....------ ( -21.60) >consensus _GGCCAG_CGGCGUGAGACCACAG__CAAGAUGUCAUUCGAUAUAGCCGUGGCCGAUCAGAUGCGCAUUGCACUGAAGUAAGUCC___CAC__C_______C_AAUCC__UUCA______ .(((((..(((((((....)))........(((((....))))).)))))))))..((((.(((.....)))))))............................................ (-25.00 = -24.53 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:55 2006