Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,337,607 – 3,337,706 |
Length | 99 |
Max. P | 0.890530 |
Location | 3,337,607 – 3,337,706 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 77.81 |
Mean single sequence MFE | -33.22 |
Consensus MFE | -21.83 |
Energy contribution | -22.33 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.19 |
Mean z-score | -1.76 |
Structure conservation index | 0.66 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3337607 99 - 27905053 GCCAGGUCAACAUCGUUCUGAAGCAGGUGCAAGGCAGCGAGGACUGUCUGUACCUCAAUGUCUACACCAGGGAGGUGAGUCA-------A---AGAACCAA-AC-AACAGG .((.(((....)))(((((...(.(((((((.(((((......)))))))))))))..((.((.((((.....)))))).))-------.---)))))...-..-....)) ( -28.20) >DroVir_CAF1 34442 106 - 1 GCCAGGUGAAUCUGGUGCUGAAGCAAGUGCAAGGCAGCGAGGAUUGCCUGUACCUGAAUGUAUAUACCAGAGAGGUGAGUUCUGUAUGGAUA---UACAU--AAUUUAAGC ((((((....))))))(((....((.(((((.(((((......)))))))))).)).((((((((.(((.(.(((.....))).).))))))---)))))--......))) ( -32.80) >DroSec_CAF1 31735 99 - 1 GCCAGGUCAACAUCGUUCUGAAGCAGGUGCAAGGCAGCGAGGACUGCCUGUACCUCAAUGUCUACACCAGGGAGGUGAGUUA-------A---AGAACCAA-AG-AACAGG .((.(((....)))(((((..((((((((((.(((((......)))))))))))).........((((.....)))).))).-------.---)))))...-..-....)) ( -30.60) >DroEre_CAF1 24678 99 - 1 GCCAGGUCAACAUCGUGCUGAAGCAGGUGCAAGGCAGCGAGGACUGCCUGUACCUCAAUGUCUACACCAGGGAGGUGAGUCG-------A---AGAUCUGC-AA-AACGAG ((.(((((.......(((....)))((((((.(((((......)))))))))))....((.((.((((.....)))))).))-------.---.)))))))-..-...... ( -34.10) >DroYak_CAF1 26373 99 - 1 GCCAGGUCAACAUCGUUCUGAAACAGGUGCAGGGCAGCGAGGACUGCCUGUACCUCAAUGUCUACACCAGGGAGGUGAGUCG-------A---AGAUCAGU-AA-AGCGAG ............(((((((((...(((((((((.(((......))))))))))))...((.((.((((.....)))))).))-------.---...)))).-..-))))). ( -32.30) >DroMoj_CAF1 35495 109 - 1 GCCAGGUGAAUCUGGUGCUGAAGCAGGUGCAGGGCAGCGAGGACUGCCUGUACCUGAACGUGUAUACCAGGGAGGUGGGUCU--AAUGAAUAGUUUACUUCAAGGUGAAGC ((((((....))))))(((....((((((((((.(((......)))))))))))))........((((...((((((((.((--(.....)))))))))))..)))).))) ( -41.30) >consensus GCCAGGUCAACAUCGUGCUGAAGCAGGUGCAAGGCAGCGAGGACUGCCUGUACCUCAAUGUCUACACCAGGGAGGUGAGUCA_______A___AGAACAAA_AA_AACAGG ..............(((((.....(((((((.(((((......)))))))))))).........((((.....))))................)))))............. (-21.83 = -22.33 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:54 2006