Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 652,511 – 652,612 |
Length | 101 |
Max. P | 0.676706 |
Location | 652,511 – 652,612 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 89.33 |
Mean single sequence MFE | -18.90 |
Consensus MFE | -13.21 |
Energy contribution | -13.43 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.14 |
Mean z-score | -2.77 |
Structure conservation index | 0.70 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.676706 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 652511 101 - 27905053 UCUGCUCUUCAAUGUAUAAGGCUUGGAAAGAAAACCUACUACAAACCUAUUACAAAAAGUGAUAUUAAAACUAAUAAAUAUCAUCUCUCUGUGCACAAACC ..(((.(.....((((..(((.(((...((.....))....))).)))..))))....((((((((..........))))))))......).)))...... ( -13.20) >DroSec_CAF1 73267 98 - 1 UCUGAUCUUCAAAGUACAAGGUUUGGAAAGUAAGCCUACUACAAACCUAUUACAAAAACUGGUAUUGGAACUAACUAAUA---UCUCUCUGUGCACAAACC .............((((((((((((...((((....)))).)))))))............((((((((......))))))---))....)))))....... ( -21.90) >DroSim_CAF1 70324 98 - 1 UCUGAUCUUCAAAGUACAAGGUUUGGAAAGUAAGCCUACUACAAACCUCUUACAAAAACUGGUAUUAGAACUAACUAAUA---UCUCUCUGUGCACAAACC .............((((((((((((...((((....)))).)))))))............((((((((......))))))---))....)))))....... ( -21.60) >consensus UCUGAUCUUCAAAGUACAAGGUUUGGAAAGUAAGCCUACUACAAACCUAUUACAAAAACUGGUAUUAGAACUAACUAAUA___UCUCUCUGUGCACAAACC .............((((((((((((...((((....)))).)))))))..............((((((......)))))).........)))))....... (-13.21 = -13.43 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:28 2006