| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 143,236 – 143,351 |
| Length | 115 |
| Max. P | 0.807213 |
| Location | 143,236 – 143,351 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.29 |
| Mean single sequence MFE | -24.53 |
| Consensus MFE | -15.60 |
| Energy contribution | -16.48 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.807213 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 143236 115 - 27905053 CUUUAAAUACCUAUUCCUUUAAAAGAAACUAUGC-----CUAGAAAGGCAUUCAACUUUCGGUCGGACUCGUAAAGUUUACCCAACAAGCAUAGUCGAGUCUAACCGACUCUUAUGGUCC ........(((...........(((.....((((-----((....))))))....)))(((((..((((((....((((.......)))).....))))))..))))).......))).. ( -28.10) >DroSec_CAF1 5635 119 - 1 GUUCAAAUACCUUUUCCUUUAAAAGUAACUAUGCCCUUCCUAGAAAGGCAUUUAACUUUCGGUCGGACUCGCAAGAUUUACCCAACAAGCAUAGUCGAGUCUA-UCGACUCUUAUAGUAC .......(((.(((......))).)))(((((((........(((((........)))))((..(((.((....)))))..)).....))))))).(((((..-..)))))......... ( -25.60) >DroSim_CAF1 6731 119 - 1 GUUCAAAUACCUUUUCCUUUAAAAGUAACUAUGCCCUUCCUAGAAAGGCAUUCAACUUUCGGUCGGACUCGCAAGAUUUACCCAACAAGCAUAGUCGAGUCUA-UCGACUCUUAUAGUCC .......(((.(((......))).)))(((((((........(((((........)))))((..(((.((....)))))..)).....))))))).(((((..-..)))))......... ( -25.60) >DroEre_CAF1 7012 98 - 1 CUACGAAAAUCUCUUUCUUUAAA--AAGGUAUGCCCUUCCCGGAAAGGUAUUGAACUUUUGGUCGGAUUCGAAAGAUUUACUCAACAAACGUAGUGUAGU-------------------- (((((..(((..((((((.....--((((.....))))...))))))..)))...(((((((......)))))))..............)))))......-------------------- ( -18.80) >consensus CUUCAAAUACCUUUUCCUUUAAAAGAAACUAUGCCCUUCCUAGAAAGGCAUUCAACUUUCGGUCGGACUCGCAAGAUUUACCCAACAAGCAUAGUCGAGUCUA_UCGACUCUUAUAGUCC ...........................(((((((........(((((........)))))((..(((.((....)))))..)).....))))))).(((((.....)))))......... (-15.60 = -16.48 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:11 2006