Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,333,026 – 3,333,122 |
Length | 96 |
Max. P | 0.743009 |
Location | 3,333,026 – 3,333,122 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 84.20 |
Mean single sequence MFE | -24.02 |
Consensus MFE | -19.73 |
Energy contribution | -20.98 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.26 |
Mean z-score | -1.68 |
Structure conservation index | 0.82 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.743009 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3333026 96 + 27905053 AGCUCGUUUCUUUCGGUGGAAACCAAAUAUGGCUCAUCGUUUUGAAUUGGAAUUUAGGGCAGUGAGCAAAUGUUUUUCCAAAAGCAACAAGUUCUA ((((.(((.((((...((((((...(((((.((((((.(((((((((....))))))))).))))))..))))))))))))))).))).))))... ( -26.10) >DroSim_CAF1 21030 96 + 1 AGCGUGUUUCUUUUGGUGGGAGUAAAAUAUGGCUCAUCGUUUUGUAUUGGAAUUUAGGGCAGUGAGCAAAUGCUUUUCCAAAAGCAACAAGUUCUA (((.((((.(((((((.(((((((.......((((((.((((((..........)))))).))))))...)))))))))))))).)))).)))... ( -27.40) >DroEre_CAF1 20146 94 + 1 AAUGUGUUUCUUUUGGUGGUUUC--UACAUGGCUCAUCAUUUUGCACGGGAAUUUAGGGCAGUGAGUAAAUGUUUUUCCGAAAGCAGCAAGUUCAA ....((((.(((((((.......--.((((.((((((.....(((.(.........).)))))))))..))))....))))))).))))....... ( -19.10) >DroYak_CAF1 21782 96 + 1 AACGUGUUUCUUUUGCGGGAAACAAUAUAUGGCUCAUCAUUUUAAAUUGGAAUUUACGGCAGUGAGUAAAUGUUUUUCCAAAAGCAACAAGUUCAA (((.((((.((((((.(..(((((.......((((((..(..(((((....)))))..)..))))))...)))))..))))))).)))).)))... ( -23.50) >consensus AACGUGUUUCUUUUGGUGGAAACAAAAUAUGGCUCAUCAUUUUGAAUUGGAAUUUAGGGCAGUGAGCAAAUGUUUUUCCAAAAGCAACAAGUUCAA (((.((((.(((((((.((((((........((((((.(((((((((....))))))))).))))))....))))))))))))).)))).)))... (-19.73 = -20.98 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:52 2006