Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,309,643 – 3,309,763 |
Length | 120 |
Max. P | 0.728477 |
Location | 3,309,643 – 3,309,763 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.14 |
Mean single sequence MFE | -31.25 |
Consensus MFE | -26.00 |
Energy contribution | -27.25 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.02 |
Structure conservation index | 0.83 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728477 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3309643 120 + 27905053 UGCAGGUGAAACGCAGUCAACGGCUCCCUCCUUGGUAGCAUUUUUCACGUAAUUUGUGACACUUAAGUGAAUAAUUUAUGCCUGCAACAUAAUUGAGUUGCACCUGCCUCCGUCUUCUAA .(((((((.(((((((.((...(((.((.....)).))).....(((((.....)))))(((....))).........)).))))..((....)).))).)))))))............. ( -33.00) >DroSec_CAF1 13835 120 + 1 UGCAGGUGAAACGCAGUCAACGGCUCCCUCCUUGGCAGCAUUUUUCACGUAAUUUGUGACACUUAAGUGAAUAAUUUAUGCCUUCAACAUAAUUGAGUUGCACCUGCCUCCGCCUUCUAA .(((((((.(((.(((((((.((......))))))).((((...(((((.....)))))(((....)))........))))............)).))).)))))))............. ( -30.30) >DroSim_CAF1 18085 120 + 1 UGCAGGUGAAACGCAGUCAACGGCUCCCUCCUUGGCAGCAUUUUUCACGUAAUUUGUGACACUUAAGUGAAUAAUUUAUGCCUGCAACAUAAUUGAGUUGCACCUGCCUCCGUCUUCUAA .(((((((.(((((((.((...(((.((.....)).))).....(((((.....)))))(((....))).........)).))))..((....)).))).)))))))............. ( -33.00) >DroYak_CAF1 24096 120 + 1 UGCAGGUAAAACGCAGGCAACAGCUCCCUCCUCGGAAACAUUUUUCACGUAAUUUGUGACACUUAAGUGAAUAAUUUAUGCCUGCAAAAUAAUUGAGUUGCACCUGGCUCCGUUUUCUAA ....((.((((((((((((..............(....).....(((((.....)))))(((....))).........))))))).........(((((......))))).))))))).. ( -28.70) >consensus UGCAGGUGAAACGCAGUCAACGGCUCCCUCCUUGGCAGCAUUUUUCACGUAAUUUGUGACACUUAAGUGAAUAAUUUAUGCCUGCAACAUAAUUGAGUUGCACCUGCCUCCGUCUUCUAA .(((((((.(((((((.((...(((.((.....)).))).....(((((.....)))))(((....))).........)).))))..((....)).))).)))))))............. (-26.00 = -27.25 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:41 2006