Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,308,615 – 3,308,735 |
Length | 120 |
Max. P | 0.980078 |
Location | 3,308,615 – 3,308,735 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.53 |
Mean single sequence MFE | -29.50 |
Consensus MFE | -28.39 |
Energy contribution | -28.45 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.59 |
Structure conservation index | 0.96 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.980078 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3308615 120 + 27905053 AAUAUGUAGCAUGCAAACAAGCGCAAACUACAUUGCUCAUUGUCUGCGUCUAAUUUAUGUUGCUGUUGGUCAGCCAGCACCAAUAAAUAAUAGUUCUUUGCUCAAACAAUUUCUGAAGUA ....((.((((((((.(((((.((((......)))).).)))).)))))........(((((.((((((....)))))).)))))..............)))))................ ( -27.30) >DroSec_CAF1 12879 120 + 1 AAUAUGUAGCAUGCAAACAAGCGCAAACUACAUUGCUCAUUGUCUGCGUCUAAUUUAUGUUGCUGUUGGUCAGCCAGCACCAAUAAAUAAUAGUUCUUUGCUCAGACAAUUUCUGAAAAA ......(((.(((((.(((((.((((......)))).).)))).)))))))).....(((((.((((((....)))))).)))))................(((((.....))))).... ( -30.00) >DroSim_CAF1 17074 120 + 1 AAUAUGUAGCAUGCAAACAAGCGCAAACUACAUUGCUCAUUGUCUGCGUCUAAUUUAUGUUGCUGUUGGUCAGCCAGCACCAAUAAAUAAUAGUUCUUUGCUCAGACAAUUUCUGAAAAA ......(((.(((((.(((((.((((......)))).).)))).)))))))).....(((((.((((((....)))))).)))))................(((((.....))))).... ( -30.00) >DroYak_CAF1 23158 120 + 1 UAUAUGUAGCAUGCAAACAAGCGCAAACUACAUUGCUCAUUGUCUGCGUCUAAUUUAUGUUGCUGUUGGUCAGCCAGCACUAAUAAAUAUAAGUUCUUUGCUCAGACAAGUUCUGAAAUA ...((((((..(((........)))..))))))......(((((((.((..((((((((((..((((((....))))))......))))))))))....)).)))))))........... ( -30.70) >consensus AAUAUGUAGCAUGCAAACAAGCGCAAACUACAUUGCUCAUUGUCUGCGUCUAAUUUAUGUUGCUGUUGGUCAGCCAGCACCAAUAAAUAAUAGUUCUUUGCUCAGACAAUUUCUGAAAAA ......(((.(((((.(((((.((((......)))).).)))).)))))))).....(((((.((((((....)))))).)))))................(((((.....))))).... (-28.39 = -28.45 + 0.06)
Location | 3,308,615 – 3,308,735 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.53 |
Mean single sequence MFE | -31.12 |
Consensus MFE | -30.76 |
Energy contribution | -30.82 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.24 |
Structure conservation index | 0.99 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3308615 120 - 27905053 UACUUCAGAAAUUGUUUGAGCAAAGAACUAUUAUUUAUUGGUGCUGGCUGACCAACAGCAACAUAAAUUAGACGCAGACAAUGAGCAAUGUAGUUUGCGCUUGUUUGCAUGCUACAUAUU ................((((((.....(((..((((((...(((((.........)))))..)))))))))..((((((((.(.((((......)))).))))))))).)))).)).... ( -29.30) >DroSec_CAF1 12879 120 - 1 UUUUUCAGAAAUUGUCUGAGCAAAGAACUAUUAUUUAUUGGUGCUGGCUGACCAACAGCAACAUAAAUUAGACGCAGACAAUGAGCAAUGUAGUUUGCGCUUGUUUGCAUGCUACAUAUU ....(((((.....)))))(((.....(((..((((((...(((((.........)))))..)))))))))..((((((((.(.((((......)))).))))))))).)))........ ( -31.80) >DroSim_CAF1 17074 120 - 1 UUUUUCAGAAAUUGUCUGAGCAAAGAACUAUUAUUUAUUGGUGCUGGCUGACCAACAGCAACAUAAAUUAGACGCAGACAAUGAGCAAUGUAGUUUGCGCUUGUUUGCAUGCUACAUAUU ....(((((.....)))))(((.....(((..((((((...(((((.........)))))..)))))))))..((((((((.(.((((......)))).))))))))).)))........ ( -31.80) >DroYak_CAF1 23158 120 - 1 UAUUUCAGAACUUGUCUGAGCAAAGAACUUAUAUUUAUUAGUGCUGGCUGACCAACAGCAACAUAAAUUAGACGCAGACAAUGAGCAAUGUAGUUUGCGCUUGUUUGCAUGCUACAUAUA ....(((((.....)))))(((.....((...((((((...(((((.........)))))..)))))).))..((((((((.(.((((......)))).))))))))).)))........ ( -31.60) >consensus UAUUUCAGAAAUUGUCUGAGCAAAGAACUAUUAUUUAUUGGUGCUGGCUGACCAACAGCAACAUAAAUUAGACGCAGACAAUGAGCAAUGUAGUUUGCGCUUGUUUGCAUGCUACAUAUU ....(((((.....)))))(((.....(((..((((((...(((((.........)))))..)))))))))..((((((((.(.((((......)))).))))))))).)))........ (-30.76 = -30.82 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:37 2006