Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,308,318 – 3,308,575 |
Length | 257 |
Max. P | 0.846011 |
Location | 3,308,318 – 3,308,420 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.17 |
Mean single sequence MFE | -36.72 |
Consensus MFE | -27.27 |
Energy contribution | -29.40 |
Covariance contribution | 2.13 |
Combinations/Pair | 1.09 |
Mean z-score | -1.42 |
Structure conservation index | 0.74 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529020 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3308318 102 - 27905053 CACCAUCCAAAAAG---------------GCUGAGUGUUUCCCAAUAUGGGCAGACGUCGAAGUUCGGCCUC---CGUUGAAGUGUGAACAUAAUUUGUCGGCAAAUUUCAGGUGAGCCU ((((........((---------------((((((((((((((.....))).)))))......)))))))).---...((((((.((.(((.....)))...)).))))))))))..... ( -28.50) >DroSec_CAF1 12560 120 - 1 CACCCUCUAAAAAGGCCAGGGAUUCGGAGGCUGAGUGUUUGCCAAUAUGGGCAGACGUCGAAGUUCGGCCUCCGCCGUUGAAGUGUGAACAUAAUUUGUCGGCAAAUUUCAGGUGAACCU ..((((((.....))..))))....((((((((((((((((((......))))))))......))))))))))((((.(((((((....)))..)))).)))).......(((....))) ( -44.30) >DroSim_CAF1 16754 120 - 1 CACCCUCUAAAAAGGCCAGGGAUUCGGAGGCUGAGUGUUUGCCAAUAUGGGCAGACGUCGAAGUUCGGCCUCCGCCGUUGAAGUGUGAACAUAAUUUGUCGGUAAAUUUCAGGUGAACCU ..((((((.....))..))))....((((((((((((((((((......))))))))......))))))))))((((.(((((((....)))..)))).)))).......(((....))) ( -41.90) >DroYak_CAF1 22850 116 - 1 CACCCUCUAAAAAGGCGAGAGAUUUGGC-GCUGAAUGUUUGCCAAUAGGAGCAGACGUCGAAGUUCGGCCUU---CGUUGAAGUGUGAACAUAAUUUGUCGGCAUUUUUCAGGUGAACCU ((((.......(((((..(((.((((((-((((..((((....))))....))).))))))).))).)))))---.(..(((((((..(((.....)))..))))))).).))))..... ( -32.20) >consensus CACCCUCUAAAAAGGCCAGGGAUUCGGA_GCUGAGUGUUUGCCAAUAUGGGCAGACGUCGAAGUUCGGCCUC___CGUUGAAGUGUGAACAUAAUUUGUCGGCAAAUUUCAGGUGAACCU ((((....................(((((((((((((((((((......))))))))......)))))))))))....((((((.((.(((.....)))...)).))))))))))..... (-27.27 = -29.40 + 2.13)
Location | 3,308,358 – 3,308,460 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.31 |
Mean single sequence MFE | -35.75 |
Consensus MFE | -25.99 |
Energy contribution | -27.43 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.10 |
Mean z-score | -1.53 |
Structure conservation index | 0.73 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596337 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3308358 102 + 27905053 CAACG---GAGGCCGAACUUCGACGUCUGCCCAUAUUGGGAAACACUCAGC---------------CUUUUUGGAUGGUGCCACAAAUCAUUCAGUGGCAUGAAUUAUAGCUGGGAAGCU ...((---(((......)))))..((...(((.....)))..)).((((((---------------.....(((.(.(((((((..........))))))).).)))..))))))..... ( -29.80) >DroSec_CAF1 12600 120 + 1 CAACGGCGGAGGCCGAACUUCGACGUCUGCCCAUAUUGGCAAACACUCAGCCUCCGAAUCCCUGGCCUUUUUAGAGGGUGCCACAAAUCAUUUAGUGGCAUGAAUUAUAGCUGGGAAGCU ....(((((((((((.....))..((.((((......)))).)).....))))))...((((...((((....))))(((((((.((....)).)))))))...........)))).))) ( -42.30) >DroSim_CAF1 16794 120 + 1 CAACGGCGGAGGCCGAACUUCGACGUCUGCCCAUAUUGGCAAACACUCAGCCUCCGAAUCCCUGGCCUUUUUAGAGGGUGCCACAAAUCAUUUAGUGGCAUGAAUUAUAGCUGCGAAGCU ......(((((((((.....))..((.((((......)))).)).....))))))).........((((....))))(((((((.((....)).))))))).......((((....)))) ( -38.30) >DroYak_CAF1 22890 116 + 1 CAACG---AAGGCCGAACUUCGACGUCUGCUCCUAUUGGCAAACAUUCAGC-GCCAAAUCUCUCGCCUUUUUAGAGGGUGCCACAAAUCAUUAAGUGGCAUGAAUUAUAGCUGGGAAGCA ...((---(((......)))))......((((((((((((...........-))))).....((.((((....))))(((((((..........)))))))))........)))).))). ( -32.60) >consensus CAACG___GAGGCCGAACUUCGACGUCUGCCCAUAUUGGCAAACACUCAGC_UCCGAAUCCCUGGCCUUUUUAGAGGGUGCCACAAAUCAUUUAGUGGCAUGAAUUAUAGCUGGGAAGCU ..(((.(((((......))))).))).((((......))))....((((((..............((((....))))(((((((..........)))))))........))))))..... (-25.99 = -27.43 + 1.44)
Location | 3,308,358 – 3,308,460 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.31 |
Mean single sequence MFE | -38.85 |
Consensus MFE | -28.91 |
Energy contribution | -30.97 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.07 |
Mean z-score | -1.92 |
Structure conservation index | 0.74 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813383 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3308358 102 - 27905053 AGCUUCCCAGCUAUAAUUCAUGCCACUGAAUGAUUUGUGGCACCAUCCAAAAAG---------------GCUGAGUGUUUCCCAAUAUGGGCAGACGUCGAAGUUCGGCCUC---CGUUG .........(((((((.((((........)))).)))))))......(((..((---------------((((((((((((((.....))).)))))......)))))))).---..))) ( -29.40) >DroSec_CAF1 12600 120 - 1 AGCUUCCCAGCUAUAAUUCAUGCCACUAAAUGAUUUGUGGCACCCUCUAAAAAGGCCAGGGAUUCGGAGGCUGAGUGUUUGCCAAUAUGGGCAGACGUCGAAGUUCGGCCUCCGCCGUUG .((.((((.(((((((.((((........)))).)))))))..(((......)))...))))...((((((((((((((((((......))))))))......))))))))))))..... ( -48.60) >DroSim_CAF1 16794 120 - 1 AGCUUCGCAGCUAUAAUUCAUGCCACUAAAUGAUUUGUGGCACCCUCUAAAAAGGCCAGGGAUUCGGAGGCUGAGUGUUUGCCAAUAUGGGCAGACGUCGAAGUUCGGCCUCCGCCGUUG ......((.(((((((.((((........)))).))))))).((((((.....))..))))....((((((((((((((((((......))))))))......))))))))))))..... ( -45.30) >DroYak_CAF1 22890 116 - 1 UGCUUCCCAGCUAUAAUUCAUGCCACUUAAUGAUUUGUGGCACCCUCUAAAAAGGCGAGAGAUUUGGC-GCUGAAUGUUUGCCAAUAGGAGCAGACGUCGAAGUUCGGCCUU---CGUUG .........(((((((.((((........)))).)))))))..........(((((..(((.((((((-((((..((((....))))....))).))))))).))).)))))---..... ( -32.10) >consensus AGCUUCCCAGCUAUAAUUCAUGCCACUAAAUGAUUUGUGGCACCCUCUAAAAAGGCCAGGGAUUCGGA_GCUGAGUGUUUGCCAAUAUGGGCAGACGUCGAAGUUCGGCCUC___CGUUG .........(((((((.((((........)))).))))))).......................(((((((((((((((((((......))))))))......)))))))))))...... (-28.91 = -30.97 + 2.06)
Location | 3,308,395 – 3,308,500 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.04 |
Mean single sequence MFE | -33.92 |
Consensus MFE | -27.84 |
Energy contribution | -28.15 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.08 |
Mean z-score | -1.60 |
Structure conservation index | 0.82 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.702427 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3308395 105 + 27905053 AAACACUCAGC---------------CUUUUUGGAUGGUGCCACAAAUCAUUCAGUGGCAUGAAUUAUAGCUGGGAAGCUCAGAACGUGCUUCCAGCGUUAAAGUGUCAUUACUGGGCUA ........(((---------------((....(((((((.......)))))))((((((((........(((((.((((.(.....).)))))))))......))))))))...))))). ( -34.54) >DroSec_CAF1 12640 120 + 1 AAACACUCAGCCUCCGAAUCCCUGGCCUUUUUAGAGGGUGCCACAAAUCAUUUAGUGGCAUGAAUUAUAGCUGGGAAGCUUAGAACGUGCUCCCAGCGUUAAAGUGUCAUUACUGGGCUU ........(((((.........((((((((....)))).)))).........(((((((((........(((((((.((.........)))))))))......)))))))))..))))). ( -37.14) >DroSim_CAF1 16834 120 + 1 AAACACUCAGCCUCCGAAUCCCUGGCCUUUUUAGAGGGUGCCACAAAUCAUUUAGUGGCAUGAAUUAUAGCUGCGAAGCUUAGAACGUGCUCCCAGCGUUAAAGUGUCAUUACUGGGCUU ........(((((.........((((((((....)))).)))).........(((((((((........((((.(.(((.........))).)))))......)))))))))..))))). ( -30.34) >DroYak_CAF1 22927 119 + 1 AAACAUUCAGC-GCCAAAUCUCUCGCCUUUUUAGAGGGUGCCACAAAUCAUUAAGUGGCAUGAAUUAUAGCUGGGAAGCAGAGAACGUGCUUCCAGCGUUAAAGUGUCAUUACUGGGCUU ........(((-.(((.......(((((((...))))))).............((((((((........(((((.(((((.......))))))))))......))))))))..)))))). ( -33.64) >consensus AAACACUCAGC_UCCGAAUCCCUGGCCUUUUUAGAGGGUGCCACAAAUCAUUUAGUGGCAUGAAUUAUAGCUGGGAAGCUUAGAACGUGCUCCCAGCGUUAAAGUGUCAUUACUGGGCUU .....(((((...............((((....))))(((((((..........)))))))........(((((((.((.........)))))))))...............)))))... (-27.84 = -28.15 + 0.31)
Location | 3,308,395 – 3,308,500 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.04 |
Mean single sequence MFE | -34.67 |
Consensus MFE | -26.35 |
Energy contribution | -26.35 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.05 |
Mean z-score | -2.03 |
Structure conservation index | 0.76 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846011 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3308395 105 - 27905053 UAGCCCAGUAAUGACACUUUAACGCUGGAAGCACGUUCUGAGCUUCCCAGCUAUAAUUCAUGCCACUGAAUGAUUUGUGGCACCAUCCAAAAAG---------------GCUGAGUGUUU ............(((((((....(((((((((.........))))))..(((((((.((((........)))).)))))))............)---------------)).))))))). ( -29.00) >DroSec_CAF1 12640 120 - 1 AAGCCCAGUAAUGACACUUUAACGCUGGGAGCACGUUCUAAGCUUCCCAGCUAUAAUUCAUGCCACUAAAUGAUUUGUGGCACCCUCUAAAAAGGCCAGGGAUUCGGAGGCUGAGUGUUU ...((((((..(((....)))..))))))(((((......(((((((..(((((((.((((........)))).))))))).((((((.....))..))))....)))))))..))))). ( -39.60) >DroSim_CAF1 16834 120 - 1 AAGCCCAGUAAUGACACUUUAACGCUGGGAGCACGUUCUAAGCUUCGCAGCUAUAAUUCAUGCCACUAAAUGAUUUGUGGCACCCUCUAAAAAGGCCAGGGAUUCGGAGGCUGAGUGUUU ...((((((..(((....)))..))))))(((((......((((((...(((((((.((((........)))).))))))).((((((.....))..)))).....))))))..))))). ( -36.90) >DroYak_CAF1 22927 119 - 1 AAGCCCAGUAAUGACACUUUAACGCUGGAAGCACGUUCUCUGCUUCCCAGCUAUAAUUCAUGCCACUUAAUGAUUUGUGGCACCCUCUAAAAAGGCGAGAGAUUUGGC-GCUGAAUGUUU .((((((((....)).((((..(((((((((((.......)))))))..(((((((.((((........)))).)))))))............))))))))...))).-)))........ ( -33.20) >consensus AAGCCCAGUAAUGACACUUUAACGCUGGAAGCACGUUCUAAGCUUCCCAGCUAUAAUUCAUGCCACUAAAUGAUUUGUGGCACCCUCUAAAAAGGCCAGGGAUUCGGA_GCUGAGUGUUU ............(((((((....(((((((((.........))))).)))).........((((((..........))))))..............................))))))). (-26.35 = -26.35 + -0.00)
Location | 3,308,460 – 3,308,575 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.73 |
Mean single sequence MFE | -28.85 |
Consensus MFE | -24.17 |
Energy contribution | -25.05 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.07 |
Mean z-score | -1.46 |
Structure conservation index | 0.84 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3308460 115 + 27905053 CAGAACGUGCUUCCAGCGUUAAAGUGUCAUUACUGGGCUAAAUGAGUCGGCGAACUGCACAAAAAAGAAGCAGACACAUACUACGCUGGAAUAGGAUGCAAA--AAAUAUGUGCAGA--- .....(.((.(((((((((....(((((.......((((.....)))).((...((.........))..)).))))).....))))))))))).).((((..--.......))))..--- ( -29.20) >DroSec_CAF1 12720 119 + 1 UAGAACGUGCUCCCAGCGUUAAAGUGUCAUUACUGGGCUUAAUGAGUCGACGAACUGCACAAAAAGGAAGCAGACACAUACCACGCUGGAAUAGGAUGCAAAA-AAAUAUGUGCACACAG ......((((..(((((((....(((((.......(((((...))))).......(((...........)))))))).....)))))))........(((...-.....))))))).... ( -29.20) >DroSim_CAF1 16914 120 + 1 UAGAACGUGCUCCCAGCGUUAAAGUGUCAUUACUGGGCUUAAUGAGUCGACGAACUGCACAAAAAGGAAGCAGACACAUACCACGCUGGAAUAGGAUGCAAAAAAAAUAUGUGCACACAG ......((((..(((((((....(((((.......(((((...))))).......(((...........)))))))).....)))))))........(((.........))))))).... ( -28.40) >DroYak_CAF1 23006 115 + 1 GAGAACGUGCUUCCAGCGUUAAAGUGUCAUUACUGGGCUUAAUGAGUCGGCGAACUGCACAAAAAAGAACCAGAUACAUACUGCGCUGGAAUAGUAUGCAAA--AAAUAUGUGCAGA--- .....((((((((((((((....(((((.......(((((...))))).((.....))..............))))).....))))))))..))))))....--.............--- ( -28.60) >consensus UAGAACGUGCUCCCAGCGUUAAAGUGUCAUUACUGGGCUUAAUGAGUCGACGAACUGCACAAAAAAGAAGCAGACACAUACCACGCUGGAAUAGGAUGCAAA__AAAUAUGUGCACA___ ......(((((((((((((....(((((.......((((.....)))).......(((...........)))))))).....)))))))))......(((.........))))))).... (-24.17 = -25.05 + 0.88)
Location | 3,308,460 – 3,308,575 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.73 |
Mean single sequence MFE | -29.41 |
Consensus MFE | -24.80 |
Energy contribution | -25.80 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.06 |
Mean z-score | -1.58 |
Structure conservation index | 0.84 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669630 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3308460 115 - 27905053 ---UCUGCACAUAUUU--UUUGCAUCCUAUUCCAGCGUAGUAUGUGUCUGCUUCUUUUUUGUGCAGUUCGCCGACUCAUUUAGCCCAGUAAUGACACUUUAACGCUGGAAGCACGUUCUG ---..((((.......--..)))).....(((((((((.....(((((((((........(((.((((....))))))).......))))..)))))....))))))))).......... ( -27.36) >DroSec_CAF1 12720 119 - 1 CUGUGUGCACAUAUUU-UUUUGCAUCCUAUUCCAGCGUGGUAUGUGUCUGCUUCCUUUUUGUGCAGUUCGUCGACUCAUUAAGCCCAGUAAUGACACUUUAACGCUGGGAGCACGUUCUA ..(((((((.(.....-.).)))......(((((((((.....(((((((((..(((...(((.((((....))))))).)))...))))..)))))....)))))))))))))...... ( -33.40) >DroSim_CAF1 16914 120 - 1 CUGUGUGCACAUAUUUUUUUUGCAUCCUAUUCCAGCGUGGUAUGUGUCUGCUUCCUUUUUGUGCAGUUCGUCGACUCAUUAAGCCCAGUAAUGACACUUUAACGCUGGGAGCACGUUCUA ..(((((((...........)))......(((((((((.....(((((((((..(((...(((.((((....))))))).)))...))))..)))))....)))))))))))))...... ( -33.00) >DroYak_CAF1 23006 115 - 1 ---UCUGCACAUAUUU--UUUGCAUACUAUUCCAGCGCAGUAUGUAUCUGGUUCUUUUUUGUGCAGUUCGCCGACUCAUUAAGCCCAGUAAUGACACUUUAACGCUGGAAGCACGUUCUC ---..((((.......--..)))).....((((((((.....(((..((((..(((....(((.((((....))))))).))).)))).....)))......)))))))).......... ( -23.90) >consensus ___UCUGCACAUAUUU__UUUGCAUCCUAUUCCAGCGUAGUAUGUGUCUGCUUCCUUUUUGUGCAGUUCGCCGACUCAUUAAGCCCAGUAAUGACACUUUAACGCUGGAAGCACGUUCUA ...(((((.((.........)).......(((((((((.....(((((((((..(((...(((.((((....))))))).)))...))))..)))))....))))))))))))))..... (-24.80 = -25.80 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:35 2006