Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 651,060 – 651,153 |
Length | 93 |
Max. P | 0.996144 |
Location | 651,060 – 651,153 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 73.47 |
Mean single sequence MFE | -37.76 |
Consensus MFE | -11.10 |
Energy contribution | -14.62 |
Covariance contribution | 3.52 |
Combinations/Pair | 1.39 |
Mean z-score | -2.54 |
Structure conservation index | 0.29 |
SVM decision value | 2.66 |
SVM RNA-class probability | 0.996144 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 651060 93 + 27905053 AACGUUUCGCCUUCCAGCUUCGGCAUCAGCCCC---CAAAGGGGAUUCUCCACUCG-------AGCGCUUUUCGCGGUGAGGGGGGCGGAGGAGGGAGAAAUG ..((((((.((((((.((....)).((.(((((---(...((((...)))).((((-------..(((.....))).)))))))))).)))))))).)))))) ( -48.20) >DroSec_CAF1 71913 93 + 1 AACGUUUCGCCUUCCAGCUCCGGCAUCAGCCCC---CAAAGGGGAUUCUCCACUCG-------AGCGCUUUUCCCAGUGAGGGGGGUGGAGGAGGGAGAAAUG ..((((((.((((((.((....)).(((.((((---(.(..((((..(((.....)-------))......))))..)..))))).))).)))))).)))))) ( -39.40) >DroSim_CAF1 68893 92 + 1 AACGUUUCGCCUUCCAGCUCCGGCAUCAGCCCC---CAAAGGGGAUUCUCCACUCG-------AGCGCUUUUCCCGGUGAGG-GGGUGGAGGAGGGAGAAAUG ..((((((.((((((.((....)).(((.((((---((..(((((..(((.....)-------)).....)))))..)).))-)).))).)))))).)))))) ( -40.50) >DroYak_CAF1 76960 74 + 1 AACGUUUCGUUUUCCAGCCUUGCCAUCAGCCCC---CAAAGGAGAUUCUUC-UUCG-------AGGGCUCUUCCGGGUAAGUGGG------------------ .............(((..((((((...(((((.---(.((((((...))))-)).)-------.)))))......))))))))).------------------ ( -22.70) >DroAna_CAF1 73913 98 + 1 AACGUUUCGUUUUCCAGCUCAGCCAUCAGGCCCCCACAAAAGAGAUUCUCCAUUCGAGAGUCGAGGGCUUUUCGGGUUUUUG-GGGUGUGAGUUGGAGA---- ..........((((((((((((((....)))((((........(((((((.....)))))))(((((((.....))))))))-)))..)))))))))))---- ( -38.00) >consensus AACGUUUCGCCUUCCAGCUCCGGCAUCAGCCCC___CAAAGGGGAUUCUCCACUCG_______AGCGCUUUUCCCGGUGAGGGGGGUGGAGGAGGGAGAAAUG ..((((((.((((((.((((((((....))).........((((...))))..............((((......))))...)))))...)))))).)))))) (-11.10 = -14.62 + 3.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:27 2006