Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,305,882 – 3,305,999 |
Length | 117 |
Max. P | 0.931487 |
Location | 3,305,882 – 3,305,999 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.91 |
Mean single sequence MFE | -16.68 |
Consensus MFE | -14.71 |
Energy contribution | -14.78 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -2.13 |
Structure conservation index | 0.88 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3305882 117 - 27905053 AUCAACCACCAGGCAGUCAGCAACAUUUUUGCCACGCCAAAAACUUUUCUCAUUACGAAAUCGUUGCAACAAA-AAGUAAACAACACAGA-AAUGCCUCCCCUUGCCCA-AAUGCAACAA ..........(((((.((.(((((.((((((......))))))..((((.......))))..)))))......-..((.....))...))-..)))))....((((...-...))))... ( -17.40) >DroSec_CAF1 9918 116 - 1 AUCAAC---CAGGCAGUCAGCAACAUUUUUGCCACGCCAAAAACUUUUCUCAUUACGAAAUCGUUGCAACAAA-AAGUAAACAACACAGAAAAUGCCACCCCUCUCCCAAAAUGCAACAA ......---..((((.((.(((((.((((((......))))))..((((.......))))..)))))......-..((.....))...))...))))....................... ( -16.70) >DroSim_CAF1 14047 116 - 1 AUCAAC---CAGGCAGUCAGCAACAUUUUUGCCACGCCAAAAACUUUUCUCAUUACGAAAUCGUUGCAACAAA-AAGUAAACAACACAGAAAAUGCCACCCCUCUCCCAAAAUGCAACAA ......---..((((.((.(((((.((((((......))))))..((((.......))))..)))))......-..((.....))...))...))))....................... ( -16.70) >DroYak_CAF1 20172 115 - 1 AUCAAC---CAGGCAGUCAGCAACAUUUUCGCCAUGCCAAAAACUUUUCUCAUUACGAAAUCGUUGCAACAAAAAAGUAAACAACACUGA-AAUGCUUCCCCUUUCCCA-AAUGCAACAA ......---.(((((.((((((((..(((((..(((..(((....)))..)))..)))))..))))).........((.....))..)))-..)))))...........-.......... ( -15.90) >consensus AUCAAC___CAGGCAGUCAGCAACAUUUUUGCCACGCCAAAAACUUUUCUCAUUACGAAAUCGUUGCAACAAA_AAGUAAACAACACAGA_AAUGCCACCCCUCUCCCA_AAUGCAACAA ...........((((.((.(((((.((((((......))))))..((((.......))))..))))).........((.....))...))...))))....................... (-14.71 = -14.78 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:20 2006