Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,305,230 – 3,305,428 |
Length | 198 |
Max. P | 0.553571 |
Location | 3,305,230 – 3,305,348 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.23 |
Mean single sequence MFE | -29.89 |
Consensus MFE | -25.67 |
Energy contribution | -26.05 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.07 |
Mean z-score | -1.42 |
Structure conservation index | 0.86 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552982 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3305230 118 + 27905053 CUCGUCUUUAAUUAAUUUCCCUACUCGUUUCUAGCAGAUUGAGGACAAAACCCGAAAACUUUCACAAUUUGCGCACG--CACAUCGCAACAGAUGUGAUGUGGCGGGCGAUAAAGUUGCC ...((((((((((.......................))))))))))..................((((((.(((.((--(((((((((.....)))))))).))).)))...)))))).. ( -31.60) >DroSec_CAF1 9290 116 + 1 GUCGUCUUUAAUUAAUUUCCCAGCUCGUUUCUAGCAGAUUGAAGACAAAACCCGAAAACUUUCACAAUUUGCGCACG--CACAUCGCAGCAGAUGUGAUGU--CGGGCGAUAAAGUUGCC ...((((((((((.........(((.......))).))))))))))..................((((((.(((.((--.((((((((.....))))))))--)).)))...)))))).. ( -29.90) >DroSim_CAF1 12899 116 + 1 GUCGUCUUUAAUUAAUUUCCCAGCUCGUUUCUAGCAGAUUGAAGACAAAACCCGAAAACUUUCACAAUUUGCGCACG--CACAUCGCAGCAGAUGUGAUGU--CGGGCGAUAAAGUUGCC ...((((((((((.........(((.......))).))))))))))..................((((((.(((.((--.((((((((.....))))))))--)).)))...)))))).. ( -29.90) >DroYak_CAF1 19497 118 + 1 GCCGUCUUUAAUUAAUCUCCCUGCUCGUUUCUAGCAGAUUGAAGACGAACCCCGAAAACUUUCACAAUUUGCGCACAUUCACAUUGCAGCAGAUGUGAUGU--CAUGCGAUAAACUUGCC ((((((((((((........(((((.......))))))))))))))).....((.......(((((.((((((((.........))).))))))))))...--....))........)). ( -28.14) >consensus GUCGUCUUUAAUUAAUUUCCCAGCUCGUUUCUAGCAGAUUGAAGACAAAACCCGAAAACUUUCACAAUUUGCGCACG__CACAUCGCAGCAGAUGUGAUGU__CGGGCGAUAAAGUUGCC ...((((((((((.......................))))))))))..................((((((.(((.((...((((((((.....))))))))..)).)))...)))))).. (-25.67 = -26.05 + 0.38)
Location | 3,305,308 – 3,305,428 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.70 |
Mean single sequence MFE | -30.88 |
Consensus MFE | -24.27 |
Energy contribution | -25.40 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.06 |
Mean z-score | -1.81 |
Structure conservation index | 0.79 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553571 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3305308 120 + 27905053 ACAUCGCAACAGAUGUGAUGUGGCGGGCGAUAAAGUUGCCGGGGCGGAGUUCAACUAUUAAUUACGUAACGGAAAUGCAAAUAUUUCAACCAAUUUGUGCCCGCAACAAGACACAGCUAC ((((((((.....)))))))).(((((((...((((((.((..(((.((((........)))).)))..))((((((....))))))...)))))).)))))))................ ( -36.20) >DroSec_CAF1 9368 118 + 1 ACAUCGCAGCAGAUGUGAUGU--CGGGCGAUAAAGUUGCCGUAGCGGAGUUCAACUAUUAAUUACGUAACGGAAAUGCAAAUAUUUCAACCAAUUUGUGUCCGCAACAAAACACAGAUAC ((((((((.....))))))))--((((((...((((((.(((.(((.((((........)))).))).)))((((((....))))))...)))))).))))))................. ( -28.70) >DroSim_CAF1 12977 118 + 1 ACAUCGCAGCAGAUGUGAUGU--CGGGCGAUAAAGUUGCCGUUGCGGAGUUCAACUAUUAAUUACGUAACGGAAAUGCAAAUAUUUCAACCAAUUUGUGCCCGCAACAAAACACAGCUAC ((((((((.....))))))))--((((((...((((((.(((((((.((((........)))).)))))))((((((....))))))...)))))).))))))................. ( -35.00) >DroYak_CAF1 19577 118 + 1 ACAUUGCAGCAGAUGUGAUGU--CAUGCGAUAAACUUGCCAGGGCGGAGUUCAACUAUUAAUUACGUAACGGAAAUGCAAAUAUUUCAACCAAUUUGUGCCCGCAACAAAACACAUCUAC ..........(((((((.(((--(....))))...((((..(((((.((...............((...))((((((....)))))).......)).))))))))).....))))))).. ( -23.60) >consensus ACAUCGCAGCAGAUGUGAUGU__CGGGCGAUAAAGUUGCCGGGGCGGAGUUCAACUAUUAAUUACGUAACGGAAAUGCAAAUAUUUCAACCAAUUUGUGCCCGCAACAAAACACAGCUAC ((((((((.....))))))))..((((((...((((((.(((.(((.((((........)))).))).)))((((((....))))))...)))))).))))))................. (-24.27 = -25.40 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:17 2006