Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,302,913 – 3,303,031 |
Length | 118 |
Max. P | 0.578182 |
Location | 3,302,913 – 3,303,031 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.44 |
Mean single sequence MFE | -31.23 |
Consensus MFE | -20.98 |
Energy contribution | -23.46 |
Covariance contribution | 2.48 |
Combinations/Pair | 1.09 |
Mean z-score | -1.82 |
Structure conservation index | 0.67 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578182 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3302913 118 - 27905053 UUAUUGCUUUGAAUAAAGUUGAGGACUAUAAAAAAACUAGGUUUAGAAU--AGUCUGUUGUGGGCGUAUCAGAGGUUGCCGGCACGACUUAGUUACUCAACCAAGAACAAGCAAUAAAGG (((((((((........((((((((((((....((((...))))...))--)))).((((((((((.((.....))))))..)))))).......)))))).......)))))))))... ( -30.96) >DroSec_CAF1 6993 119 - 1 UUAUUGCUUUGAAUAAAGUUUAGGACUAUAAA-AAACUAGGUUUGGUACGGGGUCUUUUGUGGGCGGGUCAAAGGUUGCCCGCCGGACUUAGUUACUCAACCAAGAACAAGCAAUAAGGG (((((((((.(.....((((...)))).....-...((.((((.(((((..(((((......(((((((........))))))))))))..).)))).)))).))..))))))))))... ( -36.00) >DroSim_CAF1 5433 119 - 1 UUAUUGCUUUGAAUAAAGUUUAGGACUAUAAA-AAACGAGGUUUGGUUCGGGGUCUUUUGUGGGCGGGUCAAAGGUUGCCAGCCAGACUUAGUUACUCAACCAAGAACAAGCAAUAAAGG (((((((((.(.....((((...)))).....-.(((.((((((((((.((.(.((((((.........)))))).).)))))))))))).))).............))))))))))... ( -29.20) >DroEre_CAF1 4125 116 - 1 UUAUUGCUACGAAUAAAGUUUACGACUUUAA--AAACUAGGUUCGGUAU--AGUCUGUUGUGGGCGGGUCAAAGGUUUCCCGCCGAACUAAGUUACUCAACCGAGAACAAGCAAUAAAGG ((((((((.....(((((((...))))))).--.((((.((((((((..--.((((.....))))(((..........))))))))))).)))).(((....)))....))))))))... ( -35.10) >DroYak_CAF1 9840 116 - 1 UCAAAGCAAUGAAUAAAGUUUACGACUAUAAA-AAACUAGGUUUGUAAU--AGUCUGUUGUGGGCGGGUCAAAGGUUUCCCGCUGGACUA-GUUACUCAACCAAGAAGAAGCAAUAAAAG .....((.........((((...)))).....-...((.((((.(((((--(((((......((((((..........))))))))))).-)))))..)))).)).....))........ ( -24.90) >consensus UUAUUGCUUUGAAUAAAGUUUAGGACUAUAAA_AAACUAGGUUUGGUAU__AGUCUGUUGUGGGCGGGUCAAAGGUUGCCCGCCGGACUUAGUUACUCAACCAAGAACAAGCAAUAAAGG (((((((.........((((...)))).........((.((((.((((...(((((...((((((((........)))))))).)))))....)))).)))).)).....)))))))... (-20.98 = -23.46 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:06 2006