| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,301,777 – 3,301,895 |
| Length | 118 |
| Max. P | 0.904072 |
| Location | 3,301,777 – 3,301,895 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 80.29 |
| Mean single sequence MFE | -23.33 |
| Consensus MFE | -17.75 |
| Energy contribution | -18.53 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.904072 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3301777 118 + 27905053 GAUUUACUGAUAUACAUACUUAAGGUUGGAUCAAAUACUUUAUAAUUAUUCUGAUGUCUUUAGUUGGAUCUAACGAGCUUAACUAUGAAAAUCUUUAGAUAGUUACUGUAUAUAGAAA ......(((.((((((....((((((..........))))))((((((((..(((.....(((((((.((....))..))))))).....)))....)))))))).)))))))))... ( -20.30) >DroSec_CAF1 5964 114 + 1 GAUAAACGGAAA----UACUUAUGGUUGGAUCUAAUACAUUAUAAUUAUUGUAAUGUCUUUUGUUAGAUCUAACGAGCUUAACUAUGAAAAUCUCGAAAUAGUUCCAGUAUUUAGAAA .........(((----((((....((((((((((((((((((((.....)))))))).....))))))))))))(((((......(((.....)))....))))).)))))))..... ( -26.80) >DroSim_CAF1 4321 101 + 1 -----------------AUGUAUGGUUGGAUCUAAUACAUUAUAAUUAUUGUAAUGUCUUUGGUUAGAUCUAACGAGCUUAACUAUGAAAAUCUCGAAAUAGUUCCAGUAUUUAGAAA -----------------.......((((((((((((((((((((.....)))))))).....))))))))))))..(((.((((((............))))))..)))......... ( -22.90) >consensus GAU__AC_GA_A____UACUUAUGGUUGGAUCUAAUACAUUAUAAUUAUUGUAAUGUCUUUAGUUAGAUCUAACGAGCUUAACUAUGAAAAUCUCGAAAUAGUUCCAGUAUUUAGAAA ........................((((((((((((((((((((.....)))))))).....))))))))))))..((..((((((............))))))...))......... (-17.75 = -18.53 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:01 2006