Locus 1074

Sequence ID 3R_DroMel_CAF1
Location 3,296,001 – 3,296,119
Length 118
Max. P 0.889241
window1735

overview

Window 5

Location 3,296,001 – 3,296,119
Length 118
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 97.18
Mean single sequence MFE -39.70
Consensus MFE -34.97
Energy contribution -35.97
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.70
Structure conservation index 0.88
SVM decision value 0.96
SVM RNA-class probability 0.889241
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3296001 118 + 27905053
GCUGAAAUUAUAAAUCAAUUUAACGUUGCCAAACAAGGAGGCCGGACAAAAGUGCGAGCCUCGAGCCGCAUAGUAAGUAAAUGUGCGGCGGUGGCGGUGGCAAAGUUUUCCAUUUUCC
(((.(((((.......)))))..(((..((.......(((((((.((....)).)).)))))..((((((((.........))))))))))..)))..)))................. ( -40.60)
>DroSim_CAF1 52411 118 + 1
GCUGAAAUUAUAAAUCAAUUUAACGUUGCCAAACGAGGAGGCCGGACAAAAGUGCGAGCCUCGAGCCGCAUAGUAAGUAAAUGUGCGGCGGUGGCGGUGGCAAAGUUUUCCAUUUUCC
(((.(((((.......)))))..(((..((.......(((((((.((....)).)).)))))..((((((((.........))))))))))..)))..)))................. ( -40.60)
>DroEre_CAF1 50790 115 + 1
GCUGAAAUUAUAAAUCAAUUUAACGUUGCCAAACGAGGAGGCCGUACAAAAGUGCGAGCCUCGAGCCGCAUAGUAAGUAAAUGUGC---GGUGGCGGUGGCAAAGUUUUCCAUUUUCC
.....................(((.((((((..((..((((((((((....))))).)))))..((((((((.........)))))---)))..)).)))))).)))........... ( -37.90)
>consensus
GCUGAAAUUAUAAAUCAAUUUAACGUUGCCAAACGAGGAGGCCGGACAAAAGUGCGAGCCUCGAGCCGCAUAGUAAGUAAAUGUGCGGCGGUGGCGGUGGCAAAGUUUUCCAUUUUCC
(((.(((((.......)))))..(((..((.......(((((((.((....)).)).)))))..((((((((.........))))))))))..)))..)))................. (-34.97 = -35.97 +   1.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:51 2006