Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,295,012 – 3,295,108 |
Length | 96 |
Max. P | 0.940288 |
Location | 3,295,012 – 3,295,108 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 88.89 |
Mean single sequence MFE | -41.03 |
Consensus MFE | -32.06 |
Energy contribution | -32.95 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.07 |
Mean z-score | -3.64 |
Structure conservation index | 0.78 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.940288 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3295012 96 + 27905053 UCAUGCUGCUCGGCUCGGUGGCAAUGGCAAUGGCAUUGGCAAUAGCAAUGGCAGCUUUUGUCUGCUAGUUGCCAUCAGUUGGCCGGGCAUUUCAAC ......(((((((((.(((((((((((((..((((..(((..((....))...)))..))))))))).))))))))....)))))))))....... ( -40.70) >DroSim_CAF1 49082 89 + 1 UCAUGCUGCUCGGCUCGGC-UCGGUGGCAAUGGCAUUGGC------AAUGGCAGCUUUUGUCUGCUAGUUGCCAUCAGUUGGCCGGGCAUUUCAAC ......((((((((.((((-(.(((((((((.((....))------..(((((((....).))))))))))))))))))))))))))))....... ( -42.90) >DroEre_CAF1 49737 95 + 1 UCAUGCGGCUCGGCUCGGUGGCAAUGGCAUUGGCAAUGGCAAUGGGAAUGGCAGCUUUUGUCUGCUAGUUGCCAUCAGUUGGCCG-GCAUUUCAAC ..(((((((.(((((.(((((((((..(((((.(...).)))))....(((((((....).))))))))))))))))))))))).-))))...... ( -39.50) >consensus UCAUGCUGCUCGGCUCGGUGGCAAUGGCAAUGGCAUUGGCAAU_G_AAUGGCAGCUUUUGUCUGCUAGUUGCCAUCAGUUGGCCGGGCAUUUCAAC .......((((((((.(((((((((((((..((((..(((.............)))..))))))))).))))))))....))))))))........ (-32.06 = -32.95 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:50 2006