Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,294,120 – 3,294,216 |
Length | 96 |
Max. P | 0.993617 |
Location | 3,294,120 – 3,294,216 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 93.29 |
Mean single sequence MFE | -19.73 |
Consensus MFE | -16.08 |
Energy contribution | -16.32 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.41 |
Structure conservation index | 0.82 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3294120 96 + 27905053 GUUGCUCAUACGCCAGGUAAUCCCACAUCUUUUUUGUA------GCCCGCUUAUGCCGGCUGCUCUAAUCCAAAGCAAACACCUGCGUCAUAAACUUUAAGC (((......((((.((((............((...(((------(((.((....)).))))))...))............))))))))....)))....... ( -21.55) >DroSec_CAF1 46949 96 + 1 GUUGCUCAUACGCCAGGUAAUCCCACAUCUUUUUUGUA------GCCCGCUUUUGCCGGCUGCUCUAAUCCAAAGCAAACACCUGCGUCAUAAACUUUAAGC (((......((((.((((............((...(((------(((.((....)).))))))...))............))))))))....)))....... ( -21.55) >DroSim_CAF1 48125 96 + 1 GUUGCUCAUACGCCAGGUAAUCCCACAUCUUUUUUGUA------GCCCGCUUUUGCCGGCUGCUCUAAUCCAAAGCAAACACCUGCGUCAUAAACUUUAAGC (((......((((.((((............((...(((------(((.((....)).))))))...))............))))))))....)))....... ( -21.55) >DroEre_CAF1 48843 94 + 1 GUUGCUCAUACGCCAGGUAAUCCCAUAUCUUUUUUA--------CCCCGCUUUUGCCGGCUGCUCUAAUCCAAAGCAAACACCUGCGUCAUAAACUUUAAGC (((......((((.((((..................--------.((.((....)).)).((((.........))))...))))))))....)))....... ( -15.50) >DroYak_CAF1 66424 101 + 1 GUUGCUCAUAGGCCAGGUAAUC-CAUAUCUUUUUUGUACCUUUUGCCCGCUUUUGCCGGCAGUUCUAAUCCAAAGCAAACACCUGCGUCAUAAACUUUAAGC ..........((((((((....-....................((((.((....)).))))(((.........)))....))))).)))............. ( -18.50) >consensus GUUGCUCAUACGCCAGGUAAUCCCACAUCUUUUUUGUA______GCCCGCUUUUGCCGGCUGCUCUAAUCCAAAGCAAACACCUGCGUCAUAAACUUUAAGC (((......((((.((((..........................(((.((....)).))).(((.........)))....))))))))....)))....... (-16.08 = -16.32 + 0.24)
Location | 3,294,120 – 3,294,216 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 93.29 |
Mean single sequence MFE | -28.60 |
Consensus MFE | -24.94 |
Energy contribution | -25.74 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.03 |
Structure conservation index | 0.87 |
SVM decision value | 2.41 |
SVM RNA-class probability | 0.993617 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3294120 96 - 27905053 GCUUAAAGUUUAUGACGCAGGUGUUUGCUUUGGAUUAGAGCAGCCGGCAUAAGCGGGC------UACAAAAAAGAUGUGGGAUUACCUGGCGUAUGAGCAAC .......(((((((.((((((((...((((((...))))))((((.((....)).)))------)..................))))).))))))))))... ( -30.40) >DroSec_CAF1 46949 96 - 1 GCUUAAAGUUUAUGACGCAGGUGUUUGCUUUGGAUUAGAGCAGCCGGCAAAAGCGGGC------UACAAAAAAGAUGUGGGAUUACCUGGCGUAUGAGCAAC .......(((((((.((((((((...((((((...))))))((((.((....)).)))------)..................))))).))))))))))... ( -30.40) >DroSim_CAF1 48125 96 - 1 GCUUAAAGUUUAUGACGCAGGUGUUUGCUUUGGAUUAGAGCAGCCGGCAAAAGCGGGC------UACAAAAAAGAUGUGGGAUUACCUGGCGUAUGAGCAAC .......(((((((.((((((((...((((((...))))))((((.((....)).)))------)..................))))).))))))))))... ( -30.40) >DroEre_CAF1 48843 94 - 1 GCUUAAAGUUUAUGACGCAGGUGUUUGCUUUGGAUUAGAGCAGCCGGCAAAAGCGGGG--------UAAAAAAGAUAUGGGAUUACCUGGCGUAUGAGCAAC .......(((((((.((((((((.((((((((...))))))))((.((....)).)).--------.................))))).))))))))))... ( -27.10) >DroYak_CAF1 66424 101 - 1 GCUUAAAGUUUAUGACGCAGGUGUUUGCUUUGGAUUAGAACUGCCGGCAAAAGCGGGCAAAAGGUACAAAAAAGAUAUG-GAUUACCUGGCCUAUGAGCAAC (((((..((((.((..((((...((((........)))).))))...)).))))((((...(((((.............-...))))).)))).)))))... ( -24.69) >consensus GCUUAAAGUUUAUGACGCAGGUGUUUGCUUUGGAUUAGAGCAGCCGGCAAAAGCGGGC______UACAAAAAAGAUGUGGGAUUACCUGGCGUAUGAGCAAC .......((((((.(((((((((..(((((((...)))))))(((.((....)).))).........................))))).))))))))))... (-24.94 = -25.74 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:49 2006