Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,293,167 – 3,293,266 |
Length | 99 |
Max. P | 0.500000 |
Location | 3,293,167 – 3,293,266 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 87.51 |
Mean single sequence MFE | -18.30 |
Consensus MFE | -11.98 |
Energy contribution | -11.78 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.10 |
Mean z-score | -2.00 |
Structure conservation index | 0.65 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3293167 99 + 27905053 AUAAAGAGAUAAAAUUUGUCGCUU-UUUGCGCUUCUUACACUUUGUAUAUGCACAUUAUUGGGUUAUGCACCUUGCUGAUAUUUUUAUUUCCCACGCAUU .....(((((((((..((((((..-..(((((....(((.....)))...)).((....))......)))....)).)))).)))))))))......... ( -17.30) >DroSec_CAF1 46058 82 + 1 AUAAAGAGAUAAAAUUUGUCGCUU-UUUGUGCUUCUUACACUUUGUGCAU-----------------GCACCUUGCUGAUAUUUUUAUUUCCCACGCAUU .....(((((((((..((((((..-...((((....(((.....)))...-----------------))))...)).)))).)))))))))......... ( -16.30) >DroSim_CAF1 47234 82 + 1 AUAAAGAGAUAAAAUUUGUCGCUU-UUUGUGCUUCUUACACUUUGUGCAU-----------------GCACCUUGCUGAUAUUUUUAUUUCCCACGCAUU .....(((((((((..((((((..-...((((....(((.....)))...-----------------))))...)).)))).)))))))))......... ( -16.30) >DroEre_CAF1 47835 99 + 1 AUAAAGAGAUAAAAUUUGUCGCUU-UUUGUGCUUCUUACACUUUGUAUAUGCACAUUAUUGGGUUAUGCACCUUGCUGAUAUUUUUAUUUCCCACGCAUU .....(((((((((..((((((..-..(((((....(((.....)))...))))).....((((.....)))).)).)))).)))))))))......... ( -20.80) >DroYak_CAF1 65490 100 + 1 AUAAAGAGAUAAAAUUUGUCGCUUUUUUGUGCUUCUUACACUUUGUAUAUGCACAUUAUUGGGUUAUGCACCUUGCUGAUAUUUUUAUUUCCCACGCAUU .....(((((((((..((((((.....(((((....(((.....)))...))))).....((((.....)))).)).)))).)))))))))......... ( -20.80) >consensus AUAAAGAGAUAAAAUUUGUCGCUU_UUUGUGCUUCUUACACUUUGUAUAUGCACAUUAUUGGGUUAUGCACCUUGCUGAUAUUUUUAUUUCCCACGCAUU .....(((((((((..((((.......(((((............)))))..................((.....)).)))).)))))))))......... (-11.98 = -11.78 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:48 2006