Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 645,409 – 645,499 |
Length | 90 |
Max. P | 0.618561 |
Location | 645,409 – 645,499 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 77.14 |
Mean single sequence MFE | -22.98 |
Consensus MFE | -13.82 |
Energy contribution | -14.60 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.13 |
Mean z-score | -1.47 |
Structure conservation index | 0.60 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618561 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 645409 90 + 27905053 AGGGCAUCGGAACGAAGGCCGAGUCCGAAAUUGUUGGCAAUGUCAAGUUGCUAA--GCGAAGAAAGCAGUCAUUAGACAUAA----AU-UUGAAUGU .((((.((((........)))))))).......((((((((.....))))))))--((.......)).(((....)))....----..-........ ( -22.80) >DroSec_CAF1 66080 90 + 1 AGGGCAUCGGAACGAAGGCCGAGUCCGCAUUUGUUGGCAAUGUCAAGUUGCUAA--GCGAAGAAAGCAGUCAUUAGACAUAA----AC-UUGAAUGU .((((.((((........))))))))((((((.((((((((.....))))))))--((.......)).(((....)))....----..-..)))))) ( -25.90) >DroSim_CAF1 63030 90 + 1 AGGGCAUCGGAACGAAGGCCGAGUCCGCAUUUGUUGGCAAUGUCAAGUUGCUAA--GCGAAGGAAGCAGUCAUUAGACAUAA----AC-UUGAAUGU .((((.((((........))))))))((((((.((((((((.....))))))))--((.......)).(((....)))....----..-..)))))) ( -25.90) >DroEre_CAF1 63650 95 + 1 AGGGCAUCGGAACGAAGGCCGAGCCCUCCAUUGUUGGCAAUGUCAAGUUGCUAU--GCGAAGAAAACAUUCAUUAGACAUAUGUACAUUUUAACAUU (((((.((((........)))))))))....((((((.(((((((...(((((.--..(((.......)))..))).))..)).))))))))))).. ( -23.60) >DroYak_CAF1 69489 92 + 1 AGGACAUCGGAACGAAGGCCGAACCCUCAACUGUUGGCAAAGACAAAUUGCUAU--GCGAAG---ACAUACAUUAGAUAUUAGGAGUUUUUGAAUGU (((...((((........))))..))).......((((((.......)))))).--.(((((---((..................)))))))..... ( -13.37) >DroAna_CAF1 67571 89 + 1 GAGGCAUUGGCACAAAAGCCGAUGCAUCGUUAGUUGGCAAUGUCAAGUUGCUAAAAGCGAAUAA--UUUCCAUUAAA-AUAA----UU-UAGUCUGG ...((((((((......)))))))).(((((..((((((((.....)))))))).)))))....--...((((((((-....----))-)))..))) ( -26.30) >consensus AGGGCAUCGGAACGAAGGCCGAGUCCGCAAUUGUUGGCAAUGUCAAGUUGCUAA__GCGAAGAAAGCAGUCAUUAGACAUAA____AU_UUGAAUGU .((((.((((........))))))))........(((((((.....)))))))............................................ (-13.82 = -14.60 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:24 2006