Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,289,751 – 3,289,870 |
Length | 119 |
Max. P | 0.726633 |
Location | 3,289,751 – 3,289,846 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.45 |
Mean single sequence MFE | -20.14 |
Consensus MFE | -13.53 |
Energy contribution | -13.92 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.10 |
Mean z-score | -1.61 |
Structure conservation index | 0.67 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546287 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3289751 95 + 27905053 -------AAAUCUGAAUGUCAAAUGCAGCAG----CUCAGAGAUCUGAUCAGAUAUGA--------CAAGAUGACAAAUUAGAA------AAUUUGUCAAAGAAGUUAUCGCGAUCUUUG -------...(((((.(((........))).----.))))).....((((.((((...--------.....(((((((((....------))))))))).......))))..)))).... ( -21.36) >DroSec_CAF1 42676 95 + 1 -------AAAUCUGAAUGUCAAAUGCAGCCG----CUCAGAGAUCUGAUCAGAUAUGA--------CAAGAUGACAAAUUAGAA------AAUUUGUCAAAGAAGUUAUCGCGAUCUUUG -------..((((..(((((....((....)----)((((....))))...)))))..--------..))))((((((((....------))))))))(((((.((....))..))))). ( -20.00) >DroSim_CAF1 43853 95 + 1 -------AAAUCUGAAUGUCAAAUGCAGCCG----CUCAGAGAUCUGAUCAGAUAUGA--------CAAGAUGACAAAUUAGAA------AAUUUGUCAAAGAAGUUAUCGCGAUCUUUG -------..((((..(((((....((....)----)((((....))))...)))))..--------..))))((((((((....------))))))))(((((.((....))..))))). ( -20.00) >DroEre_CAF1 44359 95 + 1 -------AAAUCUGAAUGUCAAAUGCAGCAG----CUCAGAGAUCUGAUCAGAUAUGA--------CAAGAUGACAAAUUAGAA------AAUUUGUCAAAGAACUUAUCGCGAUCUUUG -------...(((((.(((........))).----.))))).....((((.((((...--------.....(((((((((....------))))))))).......))))..)))).... ( -21.36) >DroWil_CAF1 153605 120 + 1 UUGUUUGAAAUGUAAAAGUCAAGUGCAGAAAUACCAUAAGAGAUCAUAUCAUAUAUGUUCUGGAAAAAUAUUGACAAAUUACAAAUUUCAAAUUUGUCAUAGACAUUAUCAAGAUCUCAG ..(((((((((((((..(((((.(.(((((.....(((.((.......)).)))...))))).)......)))))...)))))..)))))))).((((...))))............... ( -17.80) >DroYak_CAF1 62057 95 + 1 -------AAAUCUGUAUGUCAAAUGCAGCAG----CUCAGAGGACUGAUCAGAUAUGA--------CAAGAUGACAAAUUAGAA------AAUUUGUCAAAGAAGUUAUCGCGAUCUUUG -------..((((.((((((....((....)----)((((....))))...)))))).--------..))))((((((((....------))))))))(((((.((....))..))))). ( -20.30) >consensus _______AAAUCUGAAUGUCAAAUGCAGCAG____CUCAGAGAUCUGAUCAGAUAUGA________CAAGAUGACAAAUUAGAA______AAUUUGUCAAAGAAGUUAUCGCGAUCUUUG .....................................((((((((...(((....))).............(((((((((..........))))))))).............)))))))) (-13.53 = -13.92 + 0.39)
Location | 3,289,780 – 3,289,870 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.78 |
Mean single sequence MFE | -23.12 |
Consensus MFE | -10.65 |
Energy contribution | -10.93 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.14 |
Mean z-score | -2.01 |
Structure conservation index | 0.46 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.726633 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3289780 90 - 27905053 ---CGGAAGUGGAAU------CCCAACCAGG-------CCCAAAGAUCGCGAUAACUUCUUUGACAAAUU------UUCUAAUUUGUCAUCUUG--------UCAUAUCUGAUCAGAUCU ---.((...(((...------.))).))...-------......(((((.((((((.....(((((((((------....)))))))))....)--------)..)))))))))...... ( -20.60) >DroSec_CAF1 42705 97 - 1 ---CGGAAGUGGAAU------CCCAACCAGGCCGGCAGCCCAAAGAUCGCGAUAACUUCUUUGACAAAUU------UUCUAAUUUGUCAUCUUG--------UCAUAUCUGAUCAGAUCU ---.((...(((...------.))).)).(((.....)))....(((((.((((((.....(((((((((------....)))))))))....)--------)..)))))))))...... ( -23.70) >DroSim_CAF1 43882 97 - 1 ---CGGAAGUGGAAU------CCCAAGCAGGCCAGCAGCCCAAAGAUCGCGAUAACUUCUUUGACAAAUU------UUCUAAUUUGUCAUCUUG--------UCAUAUCUGAUCAGAUCU ---..(...(((...------.)))..).(((.....)))....(((((.((((((.....(((((((((------....)))))))))....)--------)..)))))))))...... ( -21.60) >DroEre_CAF1 44388 97 - 1 ---CGGAAGUGGAAU------CCCAUCCAACCCGCCAAGCCAAAGAUCGCGAUAAGUUCUUUGACAAAUU------UUCUAAUUUGUCAUCUUG--------UCAUAUCUGAUCAGAUCU ---(((...((((..------....))))..)))..........(((((.((((((.....(((((((((------....))))))))).))))--------)).....)))))...... ( -23.70) >DroWil_CAF1 153645 112 - 1 AAUUGUAAAAUAUAU------GCCACAAAG--AUGCUGCUCUGAGAUCUUGAUAAUGUCUAUGACAAAUUUGAAAUUUGUAAUUUGUCAAUAUUUUUCCAGAACAUAUAUGAUAUGAUCU .((..((..((((((------(...((.((--......)).))...(((.((.(((((...(((((((((..........))))))))))))))..)).))).)))))))..))..)).. ( -18.20) >DroYak_CAF1 62086 103 - 1 ---CGGAUGUGGAGUCCCGGUCCCAUCCAACCCGGCAAUCCAAAGAUCGCGAUAACUUCUUUGACAAAUU------UUCUAAUUUGUCAUCUUG--------UCAUAUCUGAUCAGUCCU ---.((((.((((...((((...........))))...))))..(((((.((((((.....(((((((((------....)))))))))....)--------)..))))))))).)))). ( -30.90) >consensus ___CGGAAGUGGAAU______CCCAACCAGGCCGGCAGCCCAAAGAUCGCGAUAACUUCUUUGACAAAUU______UUCUAAUUUGUCAUCUUG________UCAUAUCUGAUCAGAUCU ...((((.((((.............................(((((...........)))))((((((((..........))))))))..............)))).))))......... (-10.65 = -10.93 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:43 2006