Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,287,508 – 3,287,611 |
Length | 103 |
Max. P | 0.526205 |
Location | 3,287,508 – 3,287,611 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 99.22 |
Mean single sequence MFE | -27.10 |
Consensus MFE | -27.10 |
Energy contribution | -27.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.17 |
Structure conservation index | 1.00 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3287508 103 - 27905053 UCUGUGCAUAUGCCAAAGGCUUGGGCAAAUCCACUUCCGGCUAAAAUGCAUUUAAAGCAAUUAGCAAUUGUGUGCGCUGCAAAUGGCAUUAUGACGAUAUCCG ..(((.(((((((((...((..(.(((....(((.....(((((..(((.......))).)))))....)))))).).))...))))).)))))))....... ( -27.10) >DroSec_CAF1 40512 103 - 1 UCUGUGCAUAUGCCAAAGGCUUGGGCAAAUCCACUUCGGGCUAAAAUGCAUUUAAAGCAAUUAGCAAUUGUGUGCGCUGCAAAUGGCAUUAUGACGACAUCCG ..(((.(((((((((...((..(.(((....(((.....(((((..(((.......))).)))))....)))))).).))...))))).)))))))....... ( -27.10) >DroSim_CAF1 41676 103 - 1 UCUGUGCAUAUGCCAAAGGCUUGGGCAAAUCCACUUCCGGCUAAAAUGCAUUUAAAGCAAUUAGCAAUUGUGUGCGCUGCAAAUGGCAUUAUGACGACAUCCG ..(((.(((((((((...((..(.(((....(((.....(((((..(((.......))).)))))....)))))).).))...))))).)))))))....... ( -27.10) >DroEre_CAF1 42247 103 - 1 UCUGUGCAUAUGCCAAAGGCUUGGGCAAAUCCACUUCCGGCUAAAAUGCAUUUAAAGCAAUUAGCAAUUGUGUGCGCUGCAAAUGGCAUUAUGACGACAUCCG ..(((.(((((((((...((..(.(((....(((.....(((((..(((.......))).)))))....)))))).).))...))))).)))))))....... ( -27.10) >DroYak_CAF1 59891 103 - 1 UCUGUGCAUAUGCCAAAGGCUUGGGCAAAUCCACUUCCGGCUAAAAUGCAUUUAAAGCAAUUAGCAAUUGUGUGCGCUGCAAAUGGCAUUAUGACGACAUCCG ..(((.(((((((((...((..(.(((....(((.....(((((..(((.......))).)))))....)))))).).))...))))).)))))))....... ( -27.10) >consensus UCUGUGCAUAUGCCAAAGGCUUGGGCAAAUCCACUUCCGGCUAAAAUGCAUUUAAAGCAAUUAGCAAUUGUGUGCGCUGCAAAUGGCAUUAUGACGACAUCCG ..(((.(((((((((...((..(.(((....(((.....(((((..(((.......))).)))))....)))))).).))...))))).)))))))....... (-27.10 = -27.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:37 2006