Locus 1064

Sequence ID 3R_DroMel_CAF1
Location 3,287,508 – 3,287,611
Length 103
Max. P 0.526205
window1720

overview

Window 0

Location 3,287,508 – 3,287,611
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 99.22
Mean single sequence MFE -27.10
Consensus MFE -27.10
Energy contribution -27.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.17
Structure conservation index 1.00
SVM decision value -0.01
SVM RNA-class probability 0.526205
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3287508 103 - 27905053
UCUGUGCAUAUGCCAAAGGCUUGGGCAAAUCCACUUCCGGCUAAAAUGCAUUUAAAGCAAUUAGCAAUUGUGUGCGCUGCAAAUGGCAUUAUGACGAUAUCCG
..(((.(((((((((...((..(.(((....(((.....(((((..(((.......))).)))))....)))))).).))...))))).)))))))....... ( -27.10)
>DroSec_CAF1 40512 103 - 1
UCUGUGCAUAUGCCAAAGGCUUGGGCAAAUCCACUUCGGGCUAAAAUGCAUUUAAAGCAAUUAGCAAUUGUGUGCGCUGCAAAUGGCAUUAUGACGACAUCCG
..(((.(((((((((...((..(.(((....(((.....(((((..(((.......))).)))))....)))))).).))...))))).)))))))....... ( -27.10)
>DroSim_CAF1 41676 103 - 1
UCUGUGCAUAUGCCAAAGGCUUGGGCAAAUCCACUUCCGGCUAAAAUGCAUUUAAAGCAAUUAGCAAUUGUGUGCGCUGCAAAUGGCAUUAUGACGACAUCCG
..(((.(((((((((...((..(.(((....(((.....(((((..(((.......))).)))))....)))))).).))...))))).)))))))....... ( -27.10)
>DroEre_CAF1 42247 103 - 1
UCUGUGCAUAUGCCAAAGGCUUGGGCAAAUCCACUUCCGGCUAAAAUGCAUUUAAAGCAAUUAGCAAUUGUGUGCGCUGCAAAUGGCAUUAUGACGACAUCCG
..(((.(((((((((...((..(.(((....(((.....(((((..(((.......))).)))))....)))))).).))...))))).)))))))....... ( -27.10)
>DroYak_CAF1 59891 103 - 1
UCUGUGCAUAUGCCAAAGGCUUGGGCAAAUCCACUUCCGGCUAAAAUGCAUUUAAAGCAAUUAGCAAUUGUGUGCGCUGCAAAUGGCAUUAUGACGACAUCCG
..(((.(((((((((...((..(.(((....(((.....(((((..(((.......))).)))))....)))))).).))...))))).)))))))....... ( -27.10)
>consensus
UCUGUGCAUAUGCCAAAGGCUUGGGCAAAUCCACUUCCGGCUAAAAUGCAUUUAAAGCAAUUAGCAAUUGUGUGCGCUGCAAAUGGCAUUAUGACGACAUCCG
..(((.(((((((((...((..(.(((....(((.....(((((..(((.......))).)))))....)))))).).))...))))).)))))))....... (-27.10 = -27.10 +  -0.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:37 2006