Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,286,256 – 3,286,374 |
Length | 118 |
Max. P | 0.598403 |
Location | 3,286,256 – 3,286,374 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 96.27 |
Mean single sequence MFE | -30.33 |
Consensus MFE | -27.63 |
Energy contribution | -28.23 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.19 |
Structure conservation index | 0.91 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598403 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3286256 118 + 27905053 AAAUGGAUUCGGGCAACGCUUGCCACUGCUUCCGGUUGUGUUUUGUUUUUGCCUGCAAAUCUGCAAAAGUAAACAAAAGUGUUGCCAACUUGCCAGAGACAAAUACAAACGGCAGAAA .......(((.((((((((((..(((.((.....)).)))..((((((.....((((....)))).....))))))))))))))))....((((................))))))). ( -30.99) >DroSec_CAF1 39314 118 + 1 AAAUGGAUUCGGGCAACGCUUGCCACUGCUUCCGGUUGUGUUUUGUUUUUGCCUGAAAAUCUGCAAAAGUAAACAAAAGUGUUGCCAACUUGCCAGAGACAAAUACAAACGGCAGAAC .......(((.((((((((((((.((((....)))).))((((...((((((..(.....).))))))..))))..))))))))))....((((................))))))). ( -29.79) >DroSim_CAF1 40507 118 + 1 AAAUGGAUUCGGGCAACGCUUGCCACUGCUUCCGGUUGUGUUUUGUUUUUGCCUGCAAAUCUGCAAAAGUAAACAAAAGUGUUGCCAACUUGCCAGAGACAAAUACAAACGGCAGAAC .......(((.((((((((((..(((.((.....)).)))..((((((.....((((....)))).....))))))))))))))))....((((................))))))). ( -30.69) >DroEre_CAF1 40915 116 + 1 AAAUGGAUUCGGGCAACGCCUGCCACUGGUUCCGGUUG--UUUUGUUUUUGCCUGCAAAUCUGCAAAAGUAAACAAAAGUGUUGCCAACUUGCCAGGGACAAAUACAAACGGCAGAAC .......(((.((((((((..((.((((....)))).)--)(((((((.....((((....)))).....))))))).))))))))....((((..(........)....))))))). ( -30.90) >DroYak_CAF1 58725 118 + 1 AAAUGGAUUCAGGCAACGCCUGCCACUGGUUCCGGUUGUGUUUUGUUUUUGCCUGCAAAUCUGCAAAAGUAAACAAAAGUGUUGCCAACUUGCCACAGACAAAUACAAACAGCAGAAC ...(((.....((((((((..((.((((....)))).)).((((((((.....((((....)))).....))))))))))))))))......)))....................... ( -29.30) >consensus AAAUGGAUUCGGGCAACGCUUGCCACUGCUUCCGGUUGUGUUUUGUUUUUGCCUGCAAAUCUGCAAAAGUAAACAAAAGUGUUGCCAACUUGCCAGAGACAAAUACAAACGGCAGAAC .......(((.((((((((..((.((((....)))).)).((((((((.....((((....)))).....))))))))))))))))....((((................))))))). (-27.63 = -28.23 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:36 2006