Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,285,798 – 3,285,934 |
Length | 136 |
Max. P | 0.567814 |
Location | 3,285,798 – 3,285,896 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 97.03 |
Mean single sequence MFE | -18.98 |
Consensus MFE | -18.90 |
Energy contribution | -18.74 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.03 |
Structure conservation index | 1.00 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516503 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3285798 98 - 27905053 UUUAAUUUUAUUUUCUGUCAUUGUUGCCGGCGUUGCUGCACAGACAGAUACUAAUUUAGUUGAAAGCAAAAGCAAAAUUUCAUUAGCAGUGAAAACGU (((((((..(((.((((((..(((.((.(((...))))))))))))))....)))..))))))).((....))....((((((.....)))))).... ( -19.80) >DroSec_CAF1 38879 92 - 1 UUUAAUUUUAUUUUCUGUCAUUGUUGCCGGCGUUGCUGCACAGACAGAUACUAAUUUAGUUGAAAG------CAAAAUUUCAUUAGCAGUGAAAACGU (((((((..(((.((((((..(((.((.(((...))))))))))))))....)))..)))))))..------.....((((((.....)))))).... ( -18.60) >DroSim_CAF1 40072 92 - 1 UUUAAUUUUAUUUUCUGUCAUUGUUGCCGGCGUUGCUGCACAGACAGAUACUAAUUUAGUUGAAAG------CAAAAUUUCAUUAGCAGUGAAAACGU (((((((..(((.((((((..(((.((.(((...))))))))))))))....)))..)))))))..------.....((((((.....)))))).... ( -18.60) >DroEre_CAF1 40451 92 - 1 UUUAAUUUUAUUUUCUGUCAUUGUUGCCGGCGUUGCUGCACAGACAGAUACUAAUUUAGUUGAAAG------CAAAAUUUCAUUAGCAGUGAAAACGU (((((((..(((.((((((..(((.((.(((...))))))))))))))....)))..)))))))..------.....((((((.....)))))).... ( -18.60) >DroYak_CAF1 58259 92 - 1 UUUAAUUUUAUUUUCUGUCAUUGUUGCCAGCGUUGCUGCACAGACAGAUACUAAUUUAGUUGAAAG------CAAAAUUUCAUUAGCAGUGAAAACGU (((((((..(((.((((((..(((.((.(((...))))))))))))))....)))..)))))))..------.....((((((.....)))))).... ( -19.30) >consensus UUUAAUUUUAUUUUCUGUCAUUGUUGCCGGCGUUGCUGCACAGACAGAUACUAAUUUAGUUGAAAG______CAAAAUUUCAUUAGCAGUGAAAACGU (((((((..(((.((((((..(((.((.(((...))))))))))))))....)))..))))))).............((((((.....)))))).... (-18.90 = -18.74 + -0.16)
Location | 3,285,838 – 3,285,934 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 99.17 |
Mean single sequence MFE | -16.94 |
Consensus MFE | -16.22 |
Energy contribution | -16.06 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.25 |
Structure conservation index | 0.96 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567814 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3285838 96 + 27905053 UAAAUUAGUAUCUGUCUGUGCAGCAACGCCGGCAACAAUGACAGAAAAUAAAAUUAAAUAAUGCAAGCACUUUUAGGUUAAUUAAACUUGAAUAGC ..........((((((..(((.((...))..))).....)))))).....................((...((((((((.....))))))))..)) ( -16.00) >DroSec_CAF1 38913 96 + 1 UAAAUUAGUAUCUGUCUGUGCAGCAACGCCGGCAACAAUGACAGAAAAUAAAAUUAAAUAAUGCAAGCACUUUUAGGUUAAUUAAACUUGAAUAGC ..........((((((..(((.((...))..))).....)))))).....................((...((((((((.....))))))))..)) ( -16.00) >DroSim_CAF1 40106 96 + 1 UAAAUUAGUAUCUGUCUGUGCAGCAACGCCGGCAACAAUGACAGAAAAUAAAAUUAAAUAAUGCAAGCACUUUUAGGUUAAUUAAACUUGAAUAGC ..........((((((..(((.((...))..))).....)))))).....................((...((((((((.....))))))))..)) ( -16.00) >DroEre_CAF1 40485 96 + 1 UAAAUUAGUAUCUGUCUGUGCAGCAACGCCGGCAACAAUGACAGAAAAUAAAAUUAAAUAAUGCAAGCACUUUUAGGUUAAUUAAACCUGAAUAGC ..........((((((..(((.((...))..))).....)))))).....................((...((((((((.....))))))))..)) ( -18.70) >DroYak_CAF1 58293 96 + 1 UAAAUUAGUAUCUGUCUGUGCAGCAACGCUGGCAACAAUGACAGAAAAUAAAAUUAAAUAAUGCAAGCACUUUUAGGUUAAUUAAACUUGAAUAGC ..........((((((..((((((...))).))).....)))))).....................((...((((((((.....))))))))..)) ( -18.00) >consensus UAAAUUAGUAUCUGUCUGUGCAGCAACGCCGGCAACAAUGACAGAAAAUAAAAUUAAAUAAUGCAAGCACUUUUAGGUUAAUUAAACUUGAAUAGC ..........((((((..(((.((...))..))).....)))))).....................((...((((((((.....))))))))..)) (-16.22 = -16.06 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:35 2006