Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,283,936 – 3,284,056 |
Length | 120 |
Max. P | 0.855837 |
Location | 3,283,936 – 3,284,056 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.00 |
Mean single sequence MFE | -36.58 |
Consensus MFE | -32.76 |
Energy contribution | -33.32 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.42 |
Structure conservation index | 0.90 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.855837 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3283936 120 - 27905053 UUCGACUUUAAUAAAGGCUCGCUAGGCUGAGGCCUUGGCUGCUCGGAAUAAUGGCAAUUUCGACUCUAAUUGGGGAAUAACUUUUCCACCGCUGAGUGGAUUAAUUGAAGGGCGGAAAAU ((((.(((((((.((.(((((((((((....))).)))).(((((((((.......)))))))........((((((......)))).)))).))))...)).)))))))..)))).... ( -34.50) >DroSec_CAF1 37048 120 - 1 UUCGACUUUAAUAAAGGCUCGCAAGGCUGAGGCCUUGGCUGCUCGGAAUAAUGGCAAUUUCGACUCUAAUUGGGGAAUAACUUUUCCACCGCUGAGUGGCUUAAUUGAAGGGCGGAAAAU ((((.(((((((.........((((((....))))))((..(((((........(((((........)))))(((((.....)))))....)))))..))...)))))))..)))).... ( -37.40) >DroSim_CAF1 38254 120 - 1 UUCGACUUUAAUAAAGGCUCGCAAGGCUGAGGCCUUGGCUGCUCGGAAUAAUGGCAAUUUCGACUCUAAUUGGGGAAUAACUUUUCCACCGCUGAGUGGCUUAAUUGAAGGGCGGAAAAU ((((.(((((((.........((((((....))))))((..(((((........(((((........)))))(((((.....)))))....)))))..))...)))))))..)))).... ( -37.40) >DroEre_CAF1 38637 119 - 1 UUCGACUUUAAUAAAGGCUCGCAAGGCUGAGGCCUUGGCUGCUCGGAAUAAUGGCAAUUUCGGCUCUAAUUGGGA-ACAACUUUUCCACCGCUGAGUGGCUUAAUUGAAGGGCUGCAGAU ...............(((((.((((((....))))))((..(((((........(((((........)))))(((-(......))))....)))))..)).........)))))...... ( -34.90) >DroYak_CAF1 56388 120 - 1 UUCGACUUUAAUAAAGGCUCGCAAGGCUGAGGCCUUGGCUGCUCGGAAUAAUGGCAAUUGCGACUCUAAUUGGGAAAUAACUUUUCCACUGCUGAGUGGCUUAAUUGAAGGGCGGCAAAU ..(((((((....)))).)))((((((....))))))(((((((..........(((((((.((((......(((((.....)))))......)))).))..)))))..))))))).... ( -38.70) >consensus UUCGACUUUAAUAAAGGCUCGCAAGGCUGAGGCCUUGGCUGCUCGGAAUAAUGGCAAUUUCGACUCUAAUUGGGGAAUAACUUUUCCACCGCUGAGUGGCUUAAUUGAAGGGCGGAAAAU .(((.(((((((.........((((((....))))))((..(((((........(((((........)))))(((((.....)))))....)))))..))...)))))))..)))..... (-32.76 = -33.32 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:31 2006