Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 641,315 – 641,419 |
Length | 104 |
Max. P | 0.506555 |
Location | 641,315 – 641,419 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.51 |
Mean single sequence MFE | -32.07 |
Consensus MFE | -20.92 |
Energy contribution | -20.48 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.36 |
Mean z-score | -1.09 |
Structure conservation index | 0.65 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506555 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 641315 104 - 27905053 --------GGCC---ACC-----GCCUCACAUAAUGAUCUGCGGUUCUGGGACACUGGCCGCAAUGCUUUUAUGGGGCAAGACCUGGCCUCCAUUAAUGUAGAGCUCAUCCUUCACGAUU --------((((---(((-----((.(((.....)))...)))))...((....))))))((..(((....(((((((........))).))))....)))..))............... ( -29.40) >DroVir_CAF1 72842 111 - 1 --------AGCAAC-UGCUUCCAGAUUCACAUGAUGAUCUGGGGCUCGGGCACGCUGGCCGCAAUGCUCUUGUGCGGCAGCACCUGGCCGCCGUUCACGUACAGCUCGUCCUUAACGAUA --------.(.(((-.((..(((((((........)))))))(((.((((...((((.(((((.........))))))))).))))))))).)))).........((((.....)))).. ( -37.70) >DroPse_CAF1 65015 107 - 1 --------AGGAAGAUCC-----CUCUCACAUGAUGAUCUGUGGCUCGGGCACACUGGCCGCGAUGCUUUUGUGGGGCAGCACUUGGCCCCCAUUCACAUAGAGCUCAUCCUUUACAAUC --------(((((((((.-----.((......)).)))))(((((.(((.....))))))))((.(((((((((((((........))))).....))).))))))).))))........ ( -35.70) >DroWil_CAF1 63711 112 - 1 AAUGAUGAUGAC---AUC-----UUCUCACAUAAUAAUUUGCGGUUCCGGCACACUUGCCGCAAUGCUUUUGUGUGGCAACACUUGACCUCCGUUCACAUAGAGCUCAUCCUUAACAAUG ..(((.(((((.---...-----...((((((((....(((((((...(.....)..))))))).....))))))))...............((((.....))))))))).)))...... ( -25.70) >DroAna_CAF1 63534 104 - 1 --------CCCC---AUC-----GGCUCACAUUAUAAUUUGUGGCUCGGGCACACUGGCCGCGAUGCUCUUAUGUGGCAGAACUUGGCCACCAUUGAUGUACAGCUCAUCCUUAACGAUC --------....---...-----((((.((((((....(((((((.(((.....)))))))))).........(((((........)))))...))))))..)))).............. ( -28.20) >DroPer_CAF1 65583 107 - 1 --------AGGAAGAUCC-----CUCUCACAUGAUGAUCUGUGGCUCGGGCACACUGGCCGCGAUGCUUUUGUGGGGCAGCACUUGGCCCCCAUUCACAUAGAGCUCAUCCUUUACAAUC --------(((((((((.-----.((......)).)))))(((((.(((.....))))))))((.(((((((((((((........))))).....))).))))))).))))........ ( -35.70) >consensus ________AGCA___ACC_____GUCUCACAUGAUGAUCUGUGGCUCGGGCACACUGGCCGCAAUGCUUUUGUGGGGCAGCACUUGGCCCCCAUUCACAUAGAGCUCAUCCUUAACAAUC .......................................((((((.(((.....)))))))))..(((((((((((((........))))).....))).)))))............... (-20.92 = -20.48 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:23 2006