Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,283,424 – 3,283,524 |
Length | 100 |
Max. P | 0.649311 |
Location | 3,283,424 – 3,283,524 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 95.55 |
Mean single sequence MFE | -30.40 |
Consensus MFE | -25.18 |
Energy contribution | -25.58 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 0.83 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649311 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3283424 100 + 27905053 CGAAUGUGAAUGACAG-GACGAUAAGCGGACUGUUUUGGCCUGGUUUU-UUGCAUUAGCAUAAAUUACAGGCCGAUUGACAACGCGGCGAAUGCGUAAUGCA ....(((.((((((((-..((.....))..))))).(((((((..(((-.(((....))).)))...)))))))))).)))(((((.....)))))...... ( -33.30) >DroSec_CAF1 36416 102 + 1 CGAAUGUGAAUGACAGCGCCGAUAAGCGGACUGUUUUGGCCUGGUUUUUUUUCAUUAGCAUAAAUUACAGGCCGAUUGACAACGCGGCGAAUGCGUAAUGCU ....(((.((((((((..(((.....))).))))).(((((((...(((............)))...)))))))))).)))(((((.....)))))...... ( -26.90) >DroSim_CAF1 37460 101 + 1 CGAAUGUGAAUGACAGCGCCGAUAAGCGGACUGUUUUGGCCUGGUUUU-UUGCAUUAGCAUAAAUUACAGGCCGAUUGACAACGCGGCGAAUGCGUAAUGCU ....(((.((((((((..(((.....))).))))).(((((((..(((-.(((....))).)))...)))))))))).)))(((((.....)))))...... ( -32.40) >DroEre_CAF1 38267 100 + 1 CGAAUGUGAAUGACAG-GGCGAUAAGCGCACUGUUUUGGCCUGGUUUU-UUGCAUUAGCAUAAAUUACAGGCCGAUUGACAACGCGGCGAAUGCGUAAUGCG ....(((.((((((((-.(((.....))).))))).(((((((..(((-.(((....))).)))...)))))))))).)))(((((.....)))))...... ( -33.70) >DroYak_CAF1 55950 100 + 1 CGAAUGUGAAUGACAG-GGCGAUAAGCGAACUGUUUUGGCCUGGUUUU-UUGCUUUAGCAUAAAUUACAGACCGAUUGACAACGCGGCGAAUGCGUAAUGCA ....(((.((((((((-..((.....))..))))).(((.(((..(((-.(((....))).)))...))).)))))).)))(((((.....)))))...... ( -25.70) >consensus CGAAUGUGAAUGACAG_GCCGAUAAGCGGACUGUUUUGGCCUGGUUUU_UUGCAUUAGCAUAAAUUACAGGCCGAUUGACAACGCGGCGAAUGCGUAAUGCA ....(((.((((((((...((.....))..))))).(((((((.......(((....))).......)))))))))).)))(((((.....)))))...... (-25.18 = -25.58 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:30 2006