Locus 1058

Sequence ID 3R_DroMel_CAF1
Location 3,282,984 – 3,283,088
Length 104
Max. P 0.532111
window1711

overview

Window 1

Location 3,282,984 – 3,283,088
Length 104
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 92.44
Mean single sequence MFE -22.68
Consensus MFE -21.17
Energy contribution -21.17
Covariance contribution 0.00
Combinations/Pair 1.14
Mean z-score -1.29
Structure conservation index 0.93
SVM decision value -0.00
SVM RNA-class probability 0.532111
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3282984 104 + 27905053
AAACGCUUCAUAAACGCGCCGUCAUAACCCAAAA--------AAGCAUAAGGAAAAACUUAUGGCUCCCCCGGGAGACACUUGAGUGACUACAAAAACAACAGGGAGUGGAA
...((((((...........(((((.........--------...((((((......)))))).((((....))))........)))))........(....)))))))... ( -23.30)
>DroSec_CAF1 35964 112 + 1
AAACGCUUCAUAAACGCGCCGUCAUAACCCCAAAAAAAAUAAAAGCAUAAGGAAAAACUUAUGGCUCCCCCGGGAGACACUUGAGUGACUACAAAAACAACAGGGAGUGGAA
...((((((...........(((((....................((((((......)))))).((((....))))........)))))........(....)))))))... ( -23.30)
>DroEre_CAF1 37811 104 + 1
AAACGCUUCAUAAACGCGCCGUCACAACCCGAAA--------AAGCGUAAGGAAAAACUUAUGGCUCCCCCGUGGGACACUUGAGUGACUACAAGAACAACAGGGAGUGGAA
...(((.........)))..........((....--------...((((((......))))))((((((..((((..(((....))).))))..(.....).)))))))).. ( -23.80)
>DroYak_CAF1 55492 104 + 1
AAACGCUUCAUAAACGCGCCGUCAUAACCCAAAA--------AAGCUUAAGGAAAAACUUAUGGCUCCCCCGGGAGAGACUUGAGUGACUACAAAAACAACAGGGAGUGGAA
...((((((.....(((...(((....(((....--------.((((((((......)))).)))).....)))...)))....)))..........(....)))))))... ( -20.30)
>consensus
AAACGCUUCAUAAACGCGCCGUCAUAACCCAAAA________AAGCAUAAGGAAAAACUUAUGGCUCCCCCGGGAGACACUUGAGUGACUACAAAAACAACAGGGAGUGGAA
...((((((...........(((((....................((((((......)))))).((((....))))........)))))........(....)))))))... (-21.17 = -21.17 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:29 2006