Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,282,560 – 3,282,711 |
Length | 151 |
Max. P | 0.999821 |
Location | 3,282,560 – 3,282,675 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 96.35 |
Mean single sequence MFE | -33.50 |
Consensus MFE | -32.62 |
Energy contribution | -32.86 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -2.31 |
Structure conservation index | 0.97 |
SVM decision value | 4.16 |
SVM RNA-class probability | 0.999821 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3282560 115 + 27905053 GAUACAUUCAUCGAACCCCAUUGACUCUUUUGGGCUCUUUGUGAUGAAGCAUGUGGAUAGAGAACCGCACAAACCACAAGGGAUUACUACAUCAGAAGAAACCGCAAAAGGGGUU (((......))).((((((.(((.......(((..(((((.(((((.((..(((((........)))))....((....)).....)).))))))))))..))))))..)))))) ( -27.01) >DroSec_CAF1 35547 115 + 1 GAUACAUUCAUCGAACCCCAUUGACUCUUUUGGGGUCUUUGUGAUGAAGUAUGUGGAUAGAAAACCGCACAAACCGCAAGGGAUUACUACAUCAGAAGAAACCGCAAAAGGGGUU (((......))).((((((...(((((.....)))))(((.(((((.(((((((((........)))))....((....))...)))).))))).)))...........)))))) ( -35.90) >DroSim_CAF1 36596 115 + 1 GAUACAUUCAUCGAACCCCAUUGACUCUUUUGGGGUCUUUGUGAUGAAGUAUGUGGAUAGAAAACCGCACAAACCGCAAGGGAUUACUACAUCAGAAGAAACCGCAAAAGGGGUU (((......))).((((((...(((((.....)))))(((.(((((.(((((((((........)))))....((....))...)))).))))).)))...........)))))) ( -35.90) >DroEre_CAF1 37399 115 + 1 GAAACAUUCAUCGAACCCCAUUGACUCUUUUGGGGUCUUUGUGAUGAAGUAUGUGGCUAGAAAACCGCACGAACCGCAAGGGAUUACUACAUCAGAAGAAACCGCAAAAGGGGUU .............((((((...(((((.....)))))(((.(((((.(((((((((........)))))....((....))...)))).))))).)))...........)))))) ( -35.80) >DroYak_CAF1 55079 115 + 1 GUAACAUUCAUCGAACCCCAUUGACUCUUUUGGAGUCUUUGUGAUGAAGUAUGUGGAUAGAAAACCGCACAAACCGCAUGGGAUUACUACAUCAGAAGAAACCGCAAAAGGGGUU .............((((((...(((((.....)))))(((.(((((.(((((((((........)))))....((.....))..)))).))))).)))...........)))))) ( -32.90) >consensus GAUACAUUCAUCGAACCCCAUUGACUCUUUUGGGGUCUUUGUGAUGAAGUAUGUGGAUAGAAAACCGCACAAACCGCAAGGGAUUACUACAUCAGAAGAAACCGCAAAAGGGGUU .............((((((...(((((.....)))))(((.(((((.(((((((((........)))))....((....))...)))).))))).)))...........)))))) (-32.62 = -32.86 + 0.24)
Location | 3,282,600 – 3,282,711 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 97.48 |
Mean single sequence MFE | -25.84 |
Consensus MFE | -24.94 |
Energy contribution | -25.14 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.26 |
Structure conservation index | 0.97 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796600 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3282600 111 + 27905053 GUGAUGAAGCAUGUGGAUAGAGAACCGCACAAACCACAAGGGAUUACUACAUCAGAAGAAACCGCAAAAGGGGUUAAUGCACUCUUUGCACAUGGGACACAACAAGCCAAG ((..((...((((((.(.((((....(((..((((......(((......)))........((......))))))..))).)))).).))))))...))..))........ ( -23.20) >DroSec_CAF1 35587 111 + 1 GUGAUGAAGUAUGUGGAUAGAAAACCGCACAAACCGCAAGGGAUUACUACAUCAGAAGAAACCGCAAAAGGGGUUAAUGCACUCUUUGCACAUGGGACACAACAAGCCAAU .(((((.(((((((((........)))))....((....))...)))).))))).........(((((.(((((....)).))))))))...(((...........))).. ( -27.40) >DroSim_CAF1 36636 111 + 1 GUGAUGAAGUAUGUGGAUAGAAAACCGCACAAACCGCAAGGGAUUACUACAUCAGAAGAAACCGCAAAAGGGGUUAAUGCACUCUUUGCACAUGGGACACAACAAGCCAAU .(((((.(((((((((........)))))....((....))...)))).))))).........(((((.(((((....)).))))))))...(((...........))).. ( -27.40) >DroEre_CAF1 37439 111 + 1 GUGAUGAAGUAUGUGGCUAGAAAACCGCACGAACCGCAAGGGAUUACUACAUCAGAAGAAACCGCAAAAGGGGUUAAUGCACUCUUUGCACAUGGGACACAACAAGCCAAU .(((((.(((((((((........)))))....((....))...)))).))))).........(((((.(((((....)).))))))))...(((...........))).. ( -27.40) >DroYak_CAF1 55119 111 + 1 GUGAUGAAGUAUGUGGAUAGAAAACCGCACAAACCGCAUGGGAUUACUACAUCAGAAGAAACCGCAAAAGGGGUUAAUGCACUCUUUGCACAUGGGACACAACAAGCCAAU (((........(((((........)))))....((.((((((.((.((........)))).))(((((.(((((....)).)))))))).)))))).)))........... ( -23.80) >consensus GUGAUGAAGUAUGUGGAUAGAAAACCGCACAAACCGCAAGGGAUUACUACAUCAGAAGAAACCGCAAAAGGGGUUAAUGCACUCUUUGCACAUGGGACACAACAAGCCAAU .(((((.(((((((((........)))))....((....))...)))).))))).........(((((.(((((....)).))))))))...(((...........))).. (-24.94 = -25.14 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:28 2006