Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,279,930 – 3,280,047 |
Length | 117 |
Max. P | 0.999495 |
Location | 3,279,930 – 3,280,047 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 92.14 |
Mean single sequence MFE | -23.94 |
Consensus MFE | -20.98 |
Energy contribution | -20.54 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.20 |
Mean z-score | -2.62 |
Structure conservation index | 0.88 |
SVM decision value | 3.66 |
SVM RNA-class probability | 0.999495 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3279930 117 - 27905053 UAACAGCAAUUAAAUUUAAAGAACAGCAGUUAAAACUGAAAAUAGGUUGAAGCAUACCCAACAAGUGUUAGCUGCAGCAAAUGUGCAAUACCUACUGCGCAGAAAUACAAACAACAA .....((..(((....)))......((((((((.(((.......(((........))).....))).)))))))).))...((((((........))))))................ ( -21.90) >DroSec_CAF1 32980 117 - 1 GAACAGCAAUUAAGUUUCAAGAACAGCAGUUAGAACUGAAAAUAGGUUGAAGCAUACCCAACAAGUGUUAGCUGCAGCAAAUGUGCAAUACCUACUGCACAGAAAUAAAAACAACAA .............(((((.......((((((((.(((.......(((........))).....))).))))))))......((((((........)))))))))))........... ( -25.30) >DroSim_CAF1 34068 117 - 1 GAACAGCAAUUAAAUUUCAAGAACAGCAGUUAGAACUGAAAAUAGGUUGAAGCAUACCCAACAAGUGUUAGCUGCAGCAAAUGUGCAAUACCUACUGCGCAGAAAUAAAAACAACAA .............(((((.......((((((((.(((.......(((........))).....))).))))))))......((((((........)))))))))))........... ( -24.60) >DroEre_CAF1 34507 116 - 1 GAACAGCAAUUAAAUGGCAAAAACAGCAGUUAGAGCUGAAAAUAGGUUGAAGCACACCCAACAAGUGUUAGCUGCAGCAAAUGUGCAAUACCUAUUGCGCAGAA-AUAAAACAACAA ...((((..((((...((.......))..)))).)))).......((((.(((((((.......))))..))).))))...((((((((....))))))))...-............ ( -25.60) >DroYak_CAF1 52471 117 - 1 GAACGGCAAUUAAAUUUUAAAAACAGCAGUUGGAAAUGAAAAUAGGUUGAAGCUUACCCAACAAGUGUUAGCUGCAGCAAAUGUGCAAUACCCAUUGCGCAGAAUAAAAAACAACAA ............................((((.............((((.((((.((.(.....).)).)))).))))...((((((((....))))))))..........)))).. ( -22.30) >consensus GAACAGCAAUUAAAUUUCAAGAACAGCAGUUAGAACUGAAAAUAGGUUGAAGCAUACCCAACAAGUGUUAGCUGCAGCAAAUGUGCAAUACCUACUGCGCAGAAAUAAAAACAACAA .........................((((((((.(((.......(((........))).....))).))))))))......((((((........))))))................ (-20.98 = -20.54 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:26 2006