Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,276,198 – 3,276,296 |
Length | 98 |
Max. P | 0.667397 |
Location | 3,276,198 – 3,276,296 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 76.49 |
Mean single sequence MFE | -22.56 |
Consensus MFE | -5.54 |
Energy contribution | -8.02 |
Covariance contribution | 2.48 |
Combinations/Pair | 1.27 |
Mean z-score | -1.77 |
Structure conservation index | 0.25 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667397 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3276198 98 - 27905053 AGAAGCUCUUAAAGGUCAGAGAUGCGGCAGAGGAAGUUUACUUCACUGAGAAACUAGGUACAA-AUUCGAUUGCAU-UCAGAUCUGGCCAUAUUUGACAA .............((((((((((((((..(((((((....)))).(((......)))......-.)))..))))))-)....)))))))........... ( -22.60) >DroSec_CAF1 29185 99 - 1 AGAAGCUCUUAAAGGUCAGAGAUGCGGCAGAGGAAGUUUACUUCACUGAGAAACAAGGUACAA-AUUCGCUUGUACCUCAGAUCUGGCGAUAUUUGAGAA ......(((((((.((((((..((...(((..((((....)))).))).......((((((((-......))))))))))..))))))....))))))). ( -29.60) >DroSim_CAF1 30144 99 - 1 AGAAGCUCUUAAAGGUCAGAGAUGCGGCAGAGGAAGUUUACUUCACUGAGAAACGAGGUACAA-AUUCGCUUGUACCUCAGAUCUGACCAUAUUUGAAAA .............(((((((.......(((..((((....)))).)))......(((((((((-......)))))))))...)))))))........... ( -32.10) >DroEre_CAF1 30818 88 - 1 AGAAGCUCUUAAAGGUCAGAGAUGA----------ACUUACUUCACUGAGAAACUAGGUACAA-AUUCGCUUUUAC-UCAGAUCUAUUUACAUUUAAAGA .((((......(((.(((....)))----------.))).)))).(((((.....((((....-....))))...)-))))................... ( -10.70) >DroYak_CAF1 48761 78 - 1 AGAAGCUUUUAUAAGUCAGAGAUGAGUCAGAUGAAAUUUACUUUACUGAGAAGCUAGGUACAAAAUUCGCUUGUAC-UU--------------------- ...(((((((...(((.((((.(((((........)))))))))))).)))))))((((((((.......))))))-))--------------------- ( -17.80) >consensus AGAAGCUCUUAAAGGUCAGAGAUGCGGCAGAGGAAGUUUACUUCACUGAGAAACUAGGUACAA_AUUCGCUUGUAC_UCAGAUCUGGCCAUAUUUGAAAA .............(((((((..((...........((((.(((....)))))))...((((((.......))))))..))..)))))))........... ( -5.54 = -8.02 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:25 2006