Locus 1052

Sequence ID 3R_DroMel_CAF1
Location 3,268,367 – 3,268,459
Length 92
Max. P 0.637692
window1703

overview

Window 3

Location 3,268,367 – 3,268,459
Length 92
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 77.14
Mean single sequence MFE -13.20
Consensus MFE -11.70
Energy contribution -10.60
Covariance contribution -1.10
Combinations/Pair 1.35
Mean z-score -0.49
Structure conservation index 0.89
SVM decision value 0.22
SVM RNA-class probability 0.637692
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3268367 92 + 27905053
UAAGUUUCUUUCUACUUUCCAUUAAUAUUUCAGGUA---AGAUCAAUAGGGUGAGAAACUUUUCCCACUUCGCAAAAGGACUUCAUCCUCUGUAA-
.((((((((((((((((.((............)).)---)).....))))..)))))))))..........(((..((((.....)))).)))..- ( -12.80)
>DroSec_CAF1 21553 88 + 1
UAAGUU-------ACUUUCCCUUAAUACUUCAGCUUAGUAGAUCAAUAGGAUAGGACACUUUCCUCACU-CGCAGAAAGACUUCUUAUUUUGUAAU
......-------............((((.......)))).....(((((((((((..(((((..(...-.)..)))))...)))))))))))... ( -12.00)
>DroSim_CAF1 22435 88 + 1
UAAGUU-------ACUUUCCCCUAAUAUUUCAGCUUAGUAGAUCAAUAAGAUAGGACACUUUCCUCACU-CGGAGAAAGAUUUCUUAUUUUGUAAU
......-------....((..((((.........))))..))...(((((((((((..(((((..(...-.)..)))))...)))))))))))... ( -14.80)
>consensus
UAAGUU_______ACUUUCCCUUAAUAUUUCAGCUUAGUAGAUCAAUAGGAUAGGACACUUUCCUCACU_CGCAGAAAGACUUCUUAUUUUGUAAU
.............................................(((((((((((..(((((..(.....)..)))))...)))))))))))... (-11.70 = -10.60 +  -1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:21 2006