Locus 1050

Sequence ID 3R_DroMel_CAF1
Location 3,259,064 – 3,259,160
Length 96
Max. P 0.553853
window1698

overview

Window 8

Location 3,259,064 – 3,259,160
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 89.79
Mean single sequence MFE -15.96
Consensus MFE -11.82
Energy contribution -12.74
Covariance contribution 0.92
Combinations/Pair 1.14
Mean z-score -1.63
Structure conservation index 0.74
SVM decision value 0.04
SVM RNA-class probability 0.553853
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3259064 96 - 27905053
UAAUUGAAAAUGUUUAAAUAAAAUAAACGAAAUAGCAGUUUAAAGUUUAUAUUCUGCAAAGCGGUCUUGCAAAACCGCAAAAGGCAAUAAAAAAUU
..((((....((((((.......)))))).....((((..((.......))..))))...(((((........)))))......))))........ ( -15.60)
>DroSec_CAF1 12390 96 - 1
UGAUUGAAAAUGUUUAAAUAAAAUGCACGAACUAGCAGUUUAAAGUUUAUUUCCUGUACAGCGGUCUUGCAAAACCGCAAAAGGCAAUAAAAAAUA
............(((((((....(((........)))))))))).((((((.(((.....(((((........)))))...))).))))))..... ( -16.50)
>DroSim_CAF1 13105 96 - 1
UGAUUGAAAAUGUUUAAAUAAAAUGCACGAACUAGCAGUUUAAAGUUUAUUUCCUGCAAAGCGGUCUUGCAAAACCGCAAAAGGCAAUAAAAAAUA
............(((((((....(((........)))))))))).((((((.(((.....(((((........)))))...))).))))))..... ( -16.50)
>DroEre_CAF1 14417 96 - 1
UUAUGGAAAAUGUUUAAAUAAAAUGCACGAAAUAAAAGUUUAAAGAGUAUUUUCUGCAAGGCGGUCCUGCAACACCGCAAAAGGCAAUAAAAAACA
..........(((((....(((((((.(.((((....))))...).))))))).(((...(((((........))))).....))).....))))) ( -16.00)
>DroYak_CAF1 28785 94 - 1
UUAUUGAAAAUGUUUAAA--AAAUGCACGAAAUAAAAGUUUAAAGUUUAUUUCCUGCAAGGCGGUCUUGCAAAACCACAAAAGGCAAUAAAAAAUA
((((((....(((.....--...((((.((((((((.........)))))))).))))....(((........)))))).....))))))...... ( -15.20)
>consensus
UGAUUGAAAAUGUUUAAAUAAAAUGCACGAAAUAGCAGUUUAAAGUUUAUUUCCUGCAAAGCGGUCUUGCAAAACCGCAAAAGGCAAUAAAAAAUA
..........(((((........((((.(((((((...........))))))).))))..(((((........)))))...))))).......... (-11.82 = -12.74 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:17 2006