Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 635,646 – 635,744 |
Length | 98 |
Max. P | 0.625632 |
Location | 635,646 – 635,744 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 86.11 |
Mean single sequence MFE | -37.90 |
Consensus MFE | -33.74 |
Energy contribution | -34.42 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.12 |
Mean z-score | -1.43 |
Structure conservation index | 0.89 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625632 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 635646 98 + 27905053 CGACUUCGGGACCCCUUUUCGGGUGGUUAAUGAGGUGUGUGGACUACGGCACCAGAGGGAGGGGAUGGGUCGGUUAUCCGACUUGGUCUCCACUCGUU ..((((((.(((((((....))).))))..))))))((((.(....).))))....(((.((((((.((((((....))))).).)))))).)))... ( -37.10) >DroSec_CAF1 56455 94 + 1 ---CUUC-GCACCCCUUUUCGGGGGGUUAAUGAGGUGUGUGGACUACGGCACGAGAGGGAGGGAGAAGGUCGGGCAUCCGACUUGUUCUCCACUCGCU ---((((-(.((((((.....))))))...)))))(((((.(....).)))))..((.(((((((((((((((....))))))..)))))).))).)) ( -40.40) >DroSim_CAF1 53072 94 + 1 ---CUUC-GGACCCCUUUUCGGGGGGUUAAUGAGGUGUGUGGACUACGGCACGAGAGGGAGGGAGAAGGUCGGGCAUCCGACUUGUUCUCCACUCGCU ---((((-.(((((((.....)))))))...))))(((((.(....).)))))..((.(((((((((((((((....))))))..)))))).))).)) ( -42.10) >DroEre_CAF1 54627 94 + 1 ---UUUC-GGACUCCCUUUCAGGGUGUUAAUGAGGUGUGUGGACUAGGGCACAAGAGGGAGGGAGUGGGCCGGGUCCCCGACUUGUUUUCCACUCGCU ---....-...((((((((....(((((....((.........))..))))).)))))))).(((((((.((((((...))))))...)))))))... ( -32.00) >consensus ___CUUC_GGACCCCUUUUCGGGGGGUUAAUGAGGUGUGUGGACUACGGCACGAGAGGGAGGGAGAAGGUCGGGCAUCCGACUUGUUCUCCACUCGCU ...((((..(((((((.....)))))))...)))).((((.(....).))))..(((((((((...(((((((....))))))).)))))).)))... (-33.74 = -34.42 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:22 2006