Locus 1049

Sequence ID 3R_DroMel_CAF1
Location 3,251,781 – 3,251,872
Length 91
Max. P 0.500000
window1697

overview

Window 7

Location 3,251,781 – 3,251,872
Length 91
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 92.04
Mean single sequence MFE -22.73
Consensus MFE -20.14
Energy contribution -20.48
Covariance contribution 0.35
Combinations/Pair 1.05
Mean z-score -1.21
Structure conservation index 0.89
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3251781 91 - 27905053
CUCUCACGCUUUUAGCCAGCCAUAAAUCUCU-CCAGGCGGCAUUGUCCUGCUGCUUUUGCUUUAGCUGCUGCGAUGCAGCCUUUGAAAUGCC
.......((.....))..(((..........-...)))((((((.....(((((..((((..........)))).)))))......)))))) ( -22.92)
>DroSec_CAF1 5243 91 - 1
CUCUCACGCUUUUAGCCAGCCAUAAAUCUCU-CCAGGCGGCAUUGUCCUGCUGCUUUUGCUUUAGCUGCUGCGAUGCAGCCUUUGAAAUGCC
.......((.....))..(((..........-...)))((((((.....(((((..((((..........)))).)))))......)))))) ( -22.92)
>DroSim_CAF1 5887 91 - 1
CUCUCACGCUUUUAGCCAGCCAUAAAUCUCU-CCAGGCGGCAUUGUCCUGCUGCUUUUGCUUUAGCUGCUGCGAUGCAGCCUUUGAAAUGCC
.......((.....))..(((..........-...)))((((((.....(((((..((((..........)))).)))))......)))))) ( -22.92)
>DroEre_CAF1 5482 91 - 1
CUCUCACGCUUUUAGCCAGCCAUAAAUCUCU-CCAGGCGGCAUUGUCCUGCUGCUUUUGCUUUAGCUGCUGCGAUGCAGCCUUUGAAAUGCC
.......((.....))..(((..........-...)))((((((.....(((((..((((..........)))).)))))......)))))) ( -22.92)
>DroYak_CAF1 21510 90 - 1
-UCUCACGCUUUUAGCCAGCCAUAAAUCUCU-CCCGGCGGCAUUGUCCUGCUGCUUUUGCUUUAGCUGCUGCGAUGCAGCCUUUGAAAUGCC
-......((.....))..(((..........-...)))((((((.....(((((..((((..........)))).)))))......)))))) ( -22.92)
>DroAna_CAF1 13331 77 - 1
CUCUCACGCUUUUAGCCAGCUAUAAAUCUUUGCCGGGCGGCAUUGUCCUGCU---------------GCUGCGUUGCAGCCUUUGAAAUGCC
..............(((.((...........))..)))((((((.....(((---------------((......)))))......)))))) ( -21.80)
>consensus
CUCUCACGCUUUUAGCCAGCCAUAAAUCUCU_CCAGGCGGCAUUGUCCUGCUGCUUUUGCUUUAGCUGCUGCGAUGCAGCCUUUGAAAUGCC
...(((.(((.......)))..............((((.(((((((...((.(((........))).)).))))))).)))).)))...... (-20.14 = -20.48 +   0.35)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:16 2006